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Mentors and Regional Facilitators
Name Region Skills Interests
Adam Carlson Campus Champions
Andrew Fullard Campus Champions
Ami Gaspar Campus Champions, Northeast
Adrian Del Maestro Northeast
Aaron Jezghani Campus Champions
Andrew Pasquale ACCESS CSSN, At-Large, CCMNet, OnDemand
Alyssa Pivirotto ACCESS CSSN, Campus Champions
Devin Bayly ACCESS CSSN, Campus Champions, CCMNet
Brian Gregor ACCESS CSSN, Northeast, Campus Champions
Michael Blackmon Campus Champions, ACCESS CSSN
Brett Milash RMACC
Brandon Biggs OnDemand
Kevin Bryan Campus Champions
Benjamin Meyers Campus Champions
Carrie Brown CAREERS, ACCESS CSSN, CCMNet
Christina Divoll Campus Champions, ACCESS CSSN
Craig Gross Campus Champions, CCMNet
Christopher Bl… Campus Champions
Cody Stevens Campus Champions, CCMNet
Cesar Sul ACCESS CSSN, Campus Champions
David Oury Northeast
Bala Desinghu ACCESS CSSN, Campus Champions, CAREERS, Northeast
Davide Del Vento
David Carlson ACCESS CSSN, OnDemand
Daniel Morales Campus Champions
Deborah Penchoff Campus Champions
Daniel Howard ACCESS CSSN, Campus Champions, CCMNet, RMACC
David Ryglicki
Darshan Sarojini ACCESS CSSN
Elie Alhajjar ACCESS CSSN, CCMNet
Edwin Posada Campus Champions
Eden Furtak-Cole Campus Champions
Fan Chen ACCESS CSSN
Fernando Garzon ACCESS CSSN
Feseha Abebe-Akele CCMNet
Ibrahim Sheikh CAREERS
Iman Rahbari Campus Champions, ACCESS CSSN
Yu-Chieh Chi Campus Champions
James Deaton ACCESS CSSN, Campus Champions, Great Plains
Jacob Fosso Tande ACCESS CSSN, Campus Champions, CCMNet
Juanjo Garcia Mesa Campus Champions, CCMNet, ACCESS CSSN
Jordan Hayes Campus Champions
Jonathan Komperda Campus Champions
Jacob Pessin Northeast
John Goodhue CAREERS, Northeast
Juan Vanegas Northeast
Jeffrey Weekley Campus Champions
Jason Wells ACCESS CSSN, Campus Champions
Jason Yalim Campus Champions
Kali McLennan Campus Champions, Great Plains
Keri Toksu Northeast, Campus Champions
Kyle Krick ACCESS CSSN, Campus Champions
Katherine Nelson Campus Champions, CAREERS, ACCESS CSSN
Od Odbadrakh ACCESS CSSN
Kenneth Bundy CAREERS
Lakitha Wijeratne TRECIS
Thomas Langford Campus Champions, CAREERS
Lauren Hill-Beaton CAREERS
Lonnie Crosby Campus Champions, ACCESS CSSN
shuai liu ACCESS CSSN
Mohsen Ahmadkhani CCMNet, ACCESS CSSN
Martin Cuma RMACC, Campus Champions
Michael Kyle Campus Champions
Mattie Niznik Campus Champions
Mahmoud Parvizi Campus Champions
Michael Puerrer Campus Champions, Northeast
Michael Schnaitter ACCESS CSSN
Maryam Taeb
Nicholas Danes Campus Champions, MINES
Nick Dusek Campus Champions
Nannan Shan CCMNet, ACCESS CSSN
Justin Oelgoetz Campus Champions, CCMNet
Nicholas Panchy Campus Champions
Mark Perri Campus Champions
Paul Rulis Campus Champions
Mike Renfro Campus Champions, CCMNet
Russell Hofmann ACCESS CSSN, CCMNet
Rob Coyne CAREERS
Ron Rahaman Campus Champions
Grant Scott Great Plains
Shawn Doughty Campus Champions, Northeast
Shane Sanders Campus Champions
Xiaoqin Huang ACCESS CSSN
Shubha Kope Campus Champions
Swabir Silayi ACCESS CSSN, CCMNet, Campus Champions
Simon Delattre
Suhong Li CAREERS, ACCESS CSSN
Soham Pal ACCESS CSSN, Campus Champions, CCMNet
Spencer Pruitt Northeast
Sumit Saluja Campus Champions
William Sanders Campus Champions
Sebastian Sensale Campus Champions
Shawn Sivy Campus Champions, CAREERS
Steve Spicklemire Campus Champions
Sathish Srinivasan ACCESS CSSN
Tyler Burkett Kentucky
Timothy Middelkoop ACCESS CSSN, Campus Champions, CCMNet, Great Plains
Thomas Pranzatelli
Travis Ravert CCMNet
Xiaoge Wang Campus Champions
Wesley Brashear ACCESS CSSN, Campus Champions
Wirawan Purwanto Campus Champions, Northeast, ACCESS CSSN
William Lai ACCESS CSSN
Users
Name Roles Skills Interests
Andrew Cheng
student facilitator
Amin Sepehri
student facilitator
Alex Flosdorf
student facilitator
Aidan McCrillis
student facilitator
Anish Gaikwad
student facilitator
Andrew Pasquale
mentor
Ahamed Arafaat…
student facilitator
Arvind Sai Che…
student facilitator
Bill Ni
student facilitator
Carrie Brown
mentor
steering committee
Joseph Antonucci
student facilitator
Chitral Samala
student facilitator
Christopher Nadeau
student facilitator
Carlos Paniagua
researcher/educator
Bala Desinghu
mentor
researcher/educator
rcf
Daniel Evans
researcher/educator
Denis Kornev
researcher/educator
cheng fang
student facilitator
Gabrielle Martinez
student facilitator
Girish Ganesan
student facilitator
Gregory Ezike
student facilitator
Hao Zheng
student facilitator
Hening Cui
student facilitator
Hyungil Kye
student facilitator
Ibrahim Sheikh
student facilitator
mentor
regional facilitator
researcher/educator
rcf
Ifeoma Ugwuanyi
student facilitator
Jaini Bhavsar
student facilitator
Jaivik Patel
student facilitator
Jason Diaz
student facilitator
James Chen
student facilitator
Juan Florentino
student facilitator
John Acheampong
student facilitator
Jesse Sandberg
student facilitator
John Goodhue
mentor
steering committee
Kenneth Acosta
student facilitator
Katie Salas
student facilitator
Muhammad Khiza…
student facilitator
Katherine Nelson
mentor
rcf
steering committee
Kenneth Bundy
mentor
Krutika Patel
student facilitator
Thomas Langford
mentor
rcf
Lauren Hill-Beaton
mentor
Lenore Martin
researcher/educator
Dylan Le
student facilitator
Matt Ferguson
researcher/educator
Minxiu Shi
student facilitator
Madhukara Keku…
student facilitator
Nihar Biradar
student facilitator
Parth Shah
student facilitator
Qingdou Han
student facilitator
Parameshwaran …
student facilitator
Richard Le
student facilitator
Richa Gautam
student facilitator
Ritesh Bachhar
student facilitator
Rob Coyne
mentor
researcher/educator
Ryan De Lorenzo
student facilitator
Yuan Qu
student facilitator
Santhosh Alagi…
student facilitator
Siddh Agarwal
student facilitator
Sander Cohen-Janes
student facilitator
Shagesh Sridharan
student facilitator
Suhong Li
mentor
researcher/educator
Matthew Smalley
student facilitator
Stanley Nwoji
researcher/educator
Som Bishoyi
student facilitator
Seth Rosen
student facilitator
Sydney Shearer
student facilitator
Shawn Sivy
rcf
cise
Ying-Chih Sun
student facilitator
William Feng
student facilitator
Wyatt Carbonell
student facilitator
Xuejing Wang
student facilitator
Projects
Project Title Sort descending Project Institution Project Owner Tags Status
An optimized search algorithm for gravitational waves from post-merger remnants University of Rhode Island Gaurav Khanna astrophysics, conda, cuda, gpu, parallelization, python Complete
Assembly and Taxonomic Profiling of Metagenomic Sequences using Deep Learning University of Rhode Island Gaurav Khanna ai, bioinformatics, biology, deep-learning, gpu, hardware, machine-learning, neural-networks, python Complete
Calculation of Polymer Hydrophobicity Penn State-New Kensington Rob Mathers cleanup, git, github, optimization, python Complete
Deep convolutional neural networks (dCNN) for image segmentation, instance labeling, and tracking. University of Delaware Anita Schwartz bash, bioinformatics, computational-chemistry, debugging, machine-learning, programming, python, scripting, slurm, software-installation, tensorflow Complete
Deep learning for biomedical image analysis Southern Connecticut State University Binlin Wu ai, big-data, deep-learning, gpu, machine-learning, matlab, python, tensorflow Complete
Deep-learning facilitated microscopy for the dissection of durable resistance to plant disease. University of Delaware Anita Schwartz deep-learning, python Complete
Developing deep learning algorithms to analyze Raman spectral data for brain cancer diagnosis Southern CT State University Binlin Wu gpu, image-processing, machine-learning, neural-networks, python Halted
Establish Computational Analysis Infrastructure for the CCRI 16-inch Telescope. Community College of Rhode Island Gaurav Khanna astrophysics, data-analysis, git, python, research-facilitation, scripting Complete
Expanding computational resources for gravitational wave detection pipelines in medium-latency and beyond University of Rhode Island Gaurav Khanna Analysis and Algorithms, astrophysics, benchmarking, data-transfer, gravitational-waves, parallelization, python, scheduling Complete
Framework for Reduction of Ambiguity in Text Data from Generative AI Udi Zelzion ai, natural-language-processing, python In Progress
High Performance Computing vs Quantum Computing for Neural Networks supporting Artificial Intelligence Pace University Avery Leider ai, big-data, deep-learning, github, hpc-cluster-architecture, hpc-operations, jupyterhub, machine-learning, natural-language-processing, proposal-development, python, quantum-mechanics, research-facilitation, research-grants, resources, scikit-learn, singularity, vectorization Complete
High throughput Python pipeline to identify Horizontal Gene Transfer Cabrini University Vinayak Mathur bioinformatics, biology, data-wrangling, genomics, github, python, workflow Halted
Investigating the Association between Environmental Characteristics and Psychological Well-Being Kean University Galen Collier ai, api, data-analysis, gis, image-processing, machine-learning, programming, programming-best-practices, python Complete
Mapping mass and radius of compact objects to neutron star equation of state or boson star scalar potential Long Island University - Post Steven Liebling ai, astrophysics, deep-learning, machine-learning, neural-networks, nvidia, python, pytorch Halted
Metagenomic analysis to identify gene clusters associated with IgA production SUNY Upstate Medical University Joel Wilmore bioinformatics, biology, genomics, python, r, research-facilitation Finishing Up
Project WiCCED ML University of Delaware Anita Schwartz docker, hadoop, jupyterhub, kubernetes, machine-learning, programming-best-practices, python, r, software-installation, spark, tensorflow, tuning Complete
Remote sensing data management for large-area forest mapping projects University of Maine Kasey Legaard api, data-management, data-sharing, gis, python, sql Complete
Statistical Analysis of criminal cases in the United States District Court of Puerto Rico Salve Regina University Gaurav Khanna ai, data-analysis, machine-learning, python Complete
Training Program to Study Text Data Analytics on HPC Systems Udi Zelzion ai, natural-language-processing, python In Progress
Transformer-Models for Translating Tax Code University of Connecticut - Stamford Andrew Sherman ai, natural-language-processing, python Halted
Ultrafast Spectral Energy Distribution Modeling of Galaxies using GPUs Siena College John Moustakas optimization, parallelization, astrophysics, gpu, python Complete
Understanding Covid-19 Pandemic through Social Media Discussion Bryant University Gaurav Khanna ai, data-analysis, natural-language-processing, programming, programming-best-practices, python Complete
US Tax Code to Natural Language Parsable Data for Programming Languages University of Connecticut - Stamford Katherine Nelson natural-language-processing, python, sql Complete
Vector Representation with a Finance Corpus Rhode Island College Gaurav Khanna bash, batch-jobs, deep-learning, distributed-computing, machine-learning, programming, python, research-facilitation, ssh Complete
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Engagements

Re-engineering Lilly’s KisunlaTM into a novel antibody targeting IL13RA2 against GBM using AI-driven macromolecular modeling
Atrium Health Levine Cancer
  • Summary and objectives of the proposed experiments: 
  1. An initial research-based Ab (scFv47, discovered by our collaborator Dr. Balyasnikova) model, modeling Ab-Ag (IL13RA2 against GBM) protein complex, and identifying the binding sites (epitopes) using ROSETTA and AlphaFold2 multimer tools.
  2. Graft the CDRs of scFv (single-chain variable fragment) of antibody or Bispecific T cell engagers (BTEs) onto the template Ab, the framework of Lilly's Kisunla™ Ab drug.
  3. Modify, improve, and optimize the overall or full antibody protein structures using AI-driven macromolecule modeling (AlphaFold3).
  4. Explore single nucleotide polymorphism (SNP), pathogenic genetic variants and N-glycosylation of IL13RA2 (target) protein domain interacting with the Ab candidates among the patient population using ROSETTA software packages.
Status: In Progress
Bayesian nonparametric ensemble air quality model predictions at high spatio-temporal daily nationwide  1 km grid cell
Columbia University

I aim to run a Bayesian Nonparametric Ensemble (BNE) machine learning model implemented in MATLAB. Previously, I successfully tested the model on Columbia's HPC GPU cluster using SLURM. I have since enabled MATLAB parallel computing and enhanced my script with additional lines of code for optimized execution. 

I want to leverage ACCESS Accelerate allocations to run this model at scale.

The BNE framework is an innovative ensemble modeling approach designed for high-resolution air pollution exposure prediction and spatiotemporal uncertainty characterization. This work requires significant computational resources due to the complexity and scale of the task. Specifically, the model predicts daily air pollutant concentrations (PM2.5​ and NO2 at a 1 km grid resolution across the United States, spanning the years 2010–2018. Each daily prediction dataset is approximately 6 GB in size, resulting in substantial storage and processing demands.

To ensure efficient training, validation, and execution of the ensemble models at a national scale, I need access to GPU clusters with the following resources:

  • Permanent storage: ≥100 TB
  • Temporary storage: ≥50 TB
  • RAM: ≥725 GB

In addition to MATLAB, I also require Python and R installed on the system. I use Python notebooks to analyze output data and run R packages through a conda environment in Jupyter Notebook. These tools are essential for post-processing and visualization of model predictions, as well as for running complementary statistical analyses.

To finalize the GPU system configuration based on my requirements and initial runs, I would appreciate guidance from an expert. Since I already have approval for the ACCESS Accelerate allocation, this support will help ensure a smooth setup and efficient utilization of the allocated resources.

Status: Complete

People with Expertise

Shawn Doughty

Tufts University

Programs

Campus Champions, Northeast

Roles

mentor, research computing facilitator

Placeholder headshot

Expertise

Sebastian Sensale

Cleveland State University

Programs

Campus Champions

Roles

research computing facilitator

Sebastian Sensale

Expertise

alex Gutierrez

California State University-Los Angeles

Programs

ACCESS CSSN

Roles

student-facilitator

Profile Photo

Expertise

People with Interest

William Lai

Cornell University

Programs

ACCESS CSSN

Roles

mentor, researcher/educator, research computing facilitator, research software engineer, ci systems engineer, Consultant

William KM Lai

Interests

Darshan Sarojini

Virginia Polytechnic Institute and State University

Programs

ACCESS CSSN

Roles

mentor, researcher/educator

Portrait

Interests

Adedeji Adekunle

Rutgers University, Camden

Programs

CAREERS

Roles

student-facilitator

Interests