Researcher-facing

Resources

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Projects

Project Title	Project Institution	Project Owner	Tags	Status
Deep convolutional neural networks (dCNN) for image segmentation, instance labeling, and tracking.	University of Delaware	Anita Schwartz	Researcher-facing, Domain-Specific, bioinformatics, computational-chemistry, machine-learning, visualization, Programming-languages-and-software-support, scripting, programming, python, bash, HPC, slurm, Software-installation, tensorflow, debugging	In Progress
End-to-end learning of protein-protein interactions	Rutgers University–Camden	Galen Collier	Researcher-facing, Domain-Specific, bioinformatics, computational-chemistry, machine-learning, visualization, Programming-languages-and-software-support, programming-best-practices, scripting, programming, python, bash, HPC, slurm, Software-installation, tensorflow, tuning, debugging	In Progress
Physical chemistry studies of environmental pollutant transformations: SIMION modeling of ion behavior in an electric field	New Jersey Institute of Technology	Galen Collier	Researcher-facing, Domain-Specific, computational-chemistry, particle-physics, scripting, programming	New and Recruiting
Physical chemistry studies of environmental pollutant transformations: mass spectra analysis	New Jersey Institute of Technology	Galen Collier	Researcher-facing, Domain-Specific, computational-chemistry, particle-physics, scripting, programming, matlab	New and Recruiting
Physical chemistry studies of environmental pollutant transformations: LabVIEW codes for electrostatic collection and analysis of aerosol nanoparticles	New Jersey Institute of Technology	Galen Collier	Researcher-facing, Domain-Specific, computational-chemistry, particle-physics, scripting, programming	New and Recruiting
Physical chemistry studies of environmental pollutant transformations: MATLAB codes for morphological analysis of fractal soot aggregates	New Jersey Institute of Technology	Galen Collier	Researcher-facing, Domain-Specific, computational-chemistry, particle-physics, scripting, programming, matlab	New and Recruiting
Parallel analysis of variants in multiple bear genomes	Rutgers University–Camden	Galen Collier	Researcher-facing, Domain-Specific, bioinformatics, Data-Facing	In Progress
Analyzing NJ COVID-19 responses with Control theory, extending a study from earlier this year.	Rutgers-Camden	Sean McQuade	Data-facing, Researcher-facing, Simulations, Tools-and-Techniques, Programming-languages-and-software-support, programming-best-practices, programming, matlab	In Progress
Electrostatics of the GABA(A) receptor pore	Rutgers University–Camden	Galen Collier	Researcher-facing, Domain-Specific, molecular-dynamics, namd, Programming-languages-and-software-support, programming-best-practices, scripting, programming, bash, slurm	In Progress
Amsterdam Modeling Suite Software Usage on Penn State’s Roar Computer Clusters	Penn State University - Altoona Campus	Jeffrey Nucciarone	Researcher-facing, Domain-Specific, computational-chemistry, quantum-mechanics, hpc-getting-started, Tools-and-Techniques, batch-jobs, job-sizing, scheduling, terminal-emulation-and-window-management, Systems-facing, HPC-Operations, accounts, provisioning, permissions, hw-and-sw-integration, HPC, scheduler, pbs, Cluster-support, file-transfer, putty, ssh, Management/Professional Development, Technical-Training-for-HPC, Unclassified, cyberinfrastructure, HPCs	In Progress
Project WiCCED ML	University of Delaware	Anita Schwartz	Researcher-facing, Domain-Specific, machine-learning, docker, Programming-languages-and-software-support, programming-best-practices, python, r, Software-installation, tensorflow, tuning, spark, kubernetes, jupyterhub, hadoop	In Progress

Student Facilitators

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Mentors and Regional Facilitators

Name	Region	Skills	Interests
Scott Valcourt	Northeast	accounts bash batch-jobs big-data compiling cyberinfrastructure data-handling data-lifecycle more...
Kaylea Nelson	CAREERS	astrophysics bash batch-jobs Cluster-support compiling conda debugging environment-modules more...	acls astrophysics bash batch-jobs c++ compiling conda Data-facing more...
Galen Collier	CAREERS	Cluster-support cyberinfrastructure Data-facing HPC Professional-Development Researcher-facing Software-installation unix-environment
Anita Schwartz	CAREERS	bash batch-jobs Cluster-support containers Data-facing Data-Management distributed-computing environment-modules more...
Vikram Gazula	Kentucky	containers cyberinfrastructure distributed-computing HPC Researcher-facing science gateway
Thomas Cheatham	RMACC	Community-Outreach computational-chemistry gpus Management/Professional Development molecular-dynamics Proposal-Development Researcher-facing Workforce-Development	cyberinfrastructure Data-facing Management/Professional Development Researcher-facing Systems-facing
Chuck Pavloski	CAREERS	archive Cluster-support cyberinfrastructure Data-facing data-lifecycle Data-Management Domain-Specific file-system more...
Yongwook Song	Kentucky	azure big-data Data-facing deep-learning machine-learning Researcher-facing tensorflow video-processing more...
Gaurav Khanna	CAREERS, Northeast	astrophysics bash batch-jobs c++ Cloud/vm Cluster-support compiling cpus more...
James Deaton	Great Plains	archive bash cgroups Community-Outreach conda containers cyberinfrastructure data-wrangling more...

Researchers and Educators

Name	Skills	Interests
Gaurav Khanna	astrophysics bash batch-jobs c++ Cloud/vm Cluster-support compiling cpus more...

Blog Entries

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