Researcher-facing

Resources

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Projects

Project Title	Project Institution	Project Owner	Tags	Status
Deep convolutional neural networks (dCNN) for image segmentation, instance labeling, and tracking.	University of Delaware	Anita Schwartz	Researcher-facing, DomainSpecific, BioInformatics, computational chemistry, Machine-Learning, visualization, Programming Languages and Software Support, scripting, programming, python, bash, HPC, slurm, SoftwareInstallation, tensorflow, debugging	New and Recruiting
End-to-end learning of protein-protein interactions	Rutgers University–Camden	Galen Collier	Researcher-facing, DomainSpecific, BioInformatics, computational chemistry, Machine-Learning, visualization, Programming Languages and Software Support, programming best practices, scripting, programming, python, bash, HPC, slurm, SoftwareInstallation, tensorflow, tuning, debugging	New and Recruiting
Physical chemistry studies of environmental pollutant transformations: SIMION modeling of ion behavior in an electric field	New Jersey Institute of Technology	Galen Collier	Researcher-facing, DomainSpecific, computational chemistry, ParticlePhysics, scripting, programming	New and Recruiting
Physical chemistry studies of environmental pollutant transformations: mass spectra analysis	New Jersey Institute of Technology	Galen Collier	Researcher-facing, DomainSpecific, computational chemistry, ParticlePhysics, scripting, programming, matlab	New and Recruiting
Physical chemistry studies of environmental pollutant transformations: LabVIEW codes for electrostatic collection and analysis of aerosol nanoparticles	New Jersey Institute of Technology	Galen Collier	Researcher-facing, DomainSpecific, computational chemistry, ParticlePhysics, scripting, programming	New and Recruiting
Physical chemistry studies of environmental pollutant transformations: MATLAB codes for morphological analysis of fractal soot aggregates	New Jersey Institute of Technology	Galen Collier	Researcher-facing, DomainSpecific, computational chemistry, ParticlePhysics, scripting, programming, matlab	New and Recruiting
Parallel analysis of variants in multiple bear genomes	Rutgers University–Camden	Galen Collier	Researcher-facing, DomainSpecific, BioInformatics	New and Recruiting
Electrostatics of the GABA(A) receptor pore	Rutgers University–Camden	Galen Collier	Researcher-facing, DomainSpecific, Molecular-Dynamics, namd, Programming Languages and Software Support, programming best practices, scripting, programming, bash, slurm	New and Recruiting
Amsterdam Modeling Suite Software Usage on Penn State’s Roar Computer Clusters	Penn State University - Altoona Campus	Jeffrey Nucciarone	Researcher-facing, DomainSpecific, computational chemistry, Quantum-Mechanics, HPC Getting Started, Tools/Techniques, batch jobs, job sizing, scheduling, terminal emulation/window management, Systems-facing, hpc operations, accounts, provisioning, permissions, hw/sw integration, HPC, scheduler, pbs, ClusterSupport, file-transfer, putty, ssh, Management/Professional Development, Technical Training for HPC, unclassified, CyberInfrastructure, HPCs	In Progress

Student Facilitators

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Mentors and Regional Facilitators

Name	Region	Skills	Interests
Scott Valcourt	Northeast	accounts bash batch jobs big data Compiling CyberInfrastructure data handling data management data-lifecycle desktops distributed computing doi dtn firewall hardware HPC hpc operations HPCs internet metadata network networking open on-demand professional development programming programming best practices Programming Languages and Software Support provisioning Researcher-facing resources ScienceDMZ sdn security Site-Specific SoftwareInstallation spark Systems-facing tcp terminal emulation/window management Tools/Techniques unclassified unix environment website
Kaylea Nelson	CAREERS	Astrophysics bash batch jobs ClusterSupport Compiling conda debugging environment-modules file-transfer globus HPC HPC Getting Started job sizing mpi mpi parallelism performance programming programming best practices python Researcher-facing resources scheduling scripting sftp slurm SoftwareInstallation ssh unix environment x11	acls Astrophysics bash batch jobs c++ Compiling conda Data-facing debugging distributed computing environment-modules gpfs HPC Getting Started job sizing linear programming mpi mpi open on-demand parallelism performance programming best practices Programming Languages and Software Support python Researcher-facing resources scheduling scripting slurm storage
Galen Collier	CAREERS	ClusterSupport CyberInfrastructure Data-facing HPC professional development Researcher-facing SoftwareInstallation unix environment
Anita Schwartz	CAREERS	bash batch jobs ClusterSupport containers data management Data-facing distributed computing environment-modules file-transfer globus job sizing mathematica matlab mpi parallelism parallelization performance Programming Languages and Software Support putty Researcher-facing resources scheduling scripting sftp Site-Specific SoftwareInstallation ssh terminal emulation/window management Tools/Techniques vpn x11
Vikram Gazula	Kentucky	containers CyberInfrastructure distributed computing HPC Researcher-facing science gateway
Thomas Cheatham	RMACC	Community Outreach computational chemistry gpus Management/Professional Development Molecular-Dynamics Proposal Development Researcher-facing Workforce Development	CyberInfrastructure Data-facing Management/Professional Development Researcher-facing Systems-facing
Chuck Pavloski	CAREERS	archive ClusterSupport CyberInfrastructure data management Data-facing data-lifecycle DomainSpecific filesystem hardware HPC HPC Getting Started hpc operations HPCs Management/Professional Development Researcher-facing science gateway ScienceDMZ security Simulations storage Systems-facing Technical Training for HPC Tools/Techniques
Yongwook Song	Kentucky	azure big data Data-facing Deep-Learning Machine-Learning Researcher-facing tensorflow VideoProcessing website
Gaurav Khanna	CAREERS, Northeast	Astrophysics bash batch jobs c++ Cloud/VM ClusterSupport Compiling cpus cuda dependencies distributed computing DomainSpecific gpus hardware hardware architecture HPC HPC Cluster build HPC Getting Started hpc operations hw/sw integration Industrial Relations Management jupyterhub Management/Professional Development mathematica matlab MGHPCC mpi mpi OS parallelism parallelization parallelization performance professional development programming Project Management Proposal Development Quantum-Mechanics Researcher-facing resources scheduling sftp Simulations SoftwareInstallation ssh Systems-facing Tools/Techniques unix environment vectorization vpn Workforce Development
James Deaton	Great Plains	archive bash cgroups Community Outreach conda containers CyberInfrastructure data wrangling internet jupyterhub Management/Professional Development networking osg pip Proposal Development python r Researcher-facing rstudio-server s3 ScienceDMZ scripting security ssh storage storage Systems-facing Workforce Development

Researchers and Educators

Name	Skills	Interests
Gaurav Khanna	Astrophysics bash batch jobs c++ Cloud/VM ClusterSupport Compiling cpus cuda dependencies distributed computing DomainSpecific gpus hardware hardware architecture HPC HPC Cluster build HPC Getting Started hpc operations hw/sw integration Industrial Relations Management jupyterhub Management/Professional Development mathematica matlab MGHPCC mpi mpi OS parallelism parallelization parallelization performance professional development programming Project Management Proposal Development Quantum-Mechanics Researcher-facing resources scheduling sftp Simulations SoftwareInstallation ssh Systems-facing Tools/Techniques unix environment vectorization vpn Workforce Development

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