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genomics

Mentors and Regional Facilitators
Name Region Skills Interests
Carrie Brown CAREERS, ACCESS CSSN
Diana Toups Dugas RMACC, SWEETER, Campus Champions
Jordan Hayes Campus Champions
shuai liu ACCESS CSSN
Nicholas Panchy Campus Champions
Russell Hofmann ACCESS CSSN
Rob Harbert Northeast
Xiaoqin Huang ACCESS CSSN
William Lai ACCESS CSSN
Yun Shen CAREERS, Northeast, ACCESS CSSN
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Users
Name Roles Skills Interests
Carrie Brown
mentor
steering committee
Emma Strand
student facilitator
Chris Hemme
researcher/educator
Ifeoma Ugwuanyi
student facilitator
Kenneth Acosta
student facilitator
Vinayak Mathur
researcher/educator
Lenore Martin
researcher/educator
Xiaoluo Jiao
student facilitator
Stanley Nwoji
researcher/educator
William Feng
student facilitator
Younes Shafter
student facilitator
Yun Shen
mentor

CI Links

Title Category Tags Skill Level
Awesome Jupyter Widgets (for building interactive scientific workflows or science gateway tools) Learning ai, computer-graphics, plotting, visualization, big-data, data-analysis, deep-learning, image-processing, machine-learning, monte-carlo, neural-networks, data-sharing, data-lifecycle, data-management, data-management-software, data-reproducibility, github, astrophysics, data-science, novel-accelerators, computational-chemistry, genomics, materials-science, gravitational-waves, oceanography, particle-physics, physiology, psychology, quantum-computing, quantum-mechanics, biology, ondemand, science gateway, c++, jupyterhub, python Beginner, Intermediate, Advanced
Biopython Tutorial Learning bioinformatics, genomics, python Beginner, Intermediate, Advanced
How the Little Jupyter Notebook Became a Web App: Managing Increasing Complexity with nbdev Learning data-sharing, data-management-software, data-reproducibility, github, workflow, astrophysics, data-science, novel-accelerators, computational-chemistry, genomics, materials-science, gravitational-waves, oceanography, particle-physics, physiology, psychology, quantum-computing, quantum-mechanics, biology, science gateway, software-carpentry, jupyterhub, programming, python Beginner, Intermediate, Advanced
MATLAB bioinformatics toolbox Tool visualization, data-analysis, bioinformatics, genomics, matlab Beginner, Intermediate, Advanced
Recommended Libraries for Cyberinfrastructure Users Developing Jupyter Notebooks Website ai, big-data, data-analysis, machine-learning, data-sharing, data-lifecycle, data-management, data-management-software, data-reproducibility, data-wrangling, github-pages, workflow, astrophysics, data-science, computational-chemistry, genomics, materials-science, gravitational-waves, oceanography, particle-physics, physiology, psychology, quantum-computing, quantum-mechanics, biology, science gateway, conda, jupyterhub, python Beginner, Intermediate, Advanced
Research Software Development in JupyterLab: A Platform for Collaboration Between Scientists and RSEs Learning ai, visualization, big-data, data-analysis, deep-learning, machine-learning, astrophysics, data-science, novel-accelerators, computational-chemistry, genomics, materials-science, gravitational-waves, oceanography, particle-physics, physiology, psychology, quantum-computing, quantum-mechanics, biology, ondemand, science gateway, c++, jupyterhub, python, r Beginner, Intermediate
Research Software Engineering Training Materials Website astrophysics, data-science, novel-accelerators, computational-chemistry, genomics, materials-science, gravitational-waves, oceanography, particle-physics, physiology, psychology, quantum-computing, quantum-mechanics, biology, git, training, workforce-development, programming, programming-best-practices, version-control Beginner, Intermediate, Advanced
Samtools Documentation Docs documentation, data-analysis, bioinformatics, data-science, genomics Beginner, Intermediate, Advanced
Science Gateway Tool/Web App Template (Jupyter Notebook + ipywidgets) Learning data-analysis, github, astrophysics, data-science, novel-accelerators, computational-chemistry, genomics, materials-science, gravitational-waves, oceanography, particle-physics, physiology, psychology, quantum-computing, quantum-mechanics, biology, ondemand, science gateway, jupyterhub, python Beginner
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