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Projects

Project Title	Project Institution	Project Owner	Tags	Status
Deep convolutional neural networks (dCNN) for image segmentation, instance labeling, and tracking.	University of Delaware	Anita Schwartz	Researcher-facing, Domain-Specific, bioinformatics, computational-chemistry, machine-learning, visualization, Programming-languages-and-software-support, scripting, programming, python, bash, HPC, slurm, Software-installation, tensorflow, debugging	In Progress
End-to-end learning of protein-protein interactions	Rutgers University–Camden	Galen Collier	Researcher-facing, Domain-Specific, bioinformatics, computational-chemistry, machine-learning, visualization, Programming-languages-and-software-support, programming-best-practices, scripting, programming, python, bash, HPC, slurm, Software-installation, tensorflow, tuning, debugging	In Progress
Model Mie scattering and light propagation through a high scattering medium using Monte Carlo simulation	Southern Connecticut State University	Binlin Wu	data-handling, Simulations, monte-carlo, scheduling, programming, matlab	In Progress
Physical chemistry studies of environmental pollutant transformations: SIMION modeling of ion behavior in an electric field	New Jersey Institute of Technology	Galen Collier	Researcher-facing, Domain-Specific, computational-chemistry, particle-physics, scripting, programming	New and Recruiting
Physical chemistry studies of environmental pollutant transformations: mass spectra analysis	New Jersey Institute of Technology	Galen Collier	Researcher-facing, Domain-Specific, computational-chemistry, particle-physics, scripting, programming, matlab	New and Recruiting
Physical chemistry studies of environmental pollutant transformations: LabVIEW codes for electrostatic collection and analysis of aerosol nanoparticles	New Jersey Institute of Technology	Galen Collier	Researcher-facing, Domain-Specific, computational-chemistry, particle-physics, scripting, programming	New and Recruiting
Physical chemistry studies of environmental pollutant transformations: MATLAB codes for morphological analysis of fractal soot aggregates	New Jersey Institute of Technology	Galen Collier	Researcher-facing, Domain-Specific, computational-chemistry, particle-physics, scripting, programming, matlab	New and Recruiting
Analyzing NJ COVID-19 responses with Control theory, extending a study from earlier this year.	Rutgers-Camden	Sean McQuade	Data-facing, Researcher-facing, Simulations, Tools-and-Techniques, Programming-languages-and-software-support, programming-best-practices, programming, matlab	In Progress
Electrostatics of the GABA(A) receptor pore	Rutgers University–Camden	Galen Collier	Researcher-facing, Domain-Specific, molecular-dynamics, namd, Programming-languages-and-software-support, programming-best-practices, scripting, programming, bash, slurm	In Progress

Student Facilitators

Name	Skills	Interests
Alex Flosdorf	bash c++ programming programming-best-practices Programming-languages-and-software-support python
Bill Ni	aws c++ linear-programming parallelism pip programming Project-Management python more...	AI astrophysics aws bash big-data bioinformatics c++ cybersecurity more...
Matthew Smalley	bash c++ containers cybersecurity file-system gce networking programming more...
Donna Kim	c++ programming	tcp
Dylan Le	bash c++ monte-carlo mpi programming programming-best-practices Programming-languages-and-software-support python more...	AI big-data cloud-commercial cloud-open-source Cluster-support cybersecurity deep-learning HPC more...
Andrew Cheng	programming python r
Girish Ganesan	AI bash bioinformatics c++ computational-chemistry conda deep-learning file-transfer more...	aws azure bash batch-jobs big-data cuda distributed-computing job-sizing more...
Divjyot Singh	astrophysics c++ computational-chemistry computational-chemistry (obsolete) data-analysis matlab molecular-dynamics molecular-dynamics more...	astrophysics blackhole HPC machine-learning molecular-dynamics monte-carlo nasa neural-network more...

Mentors and Regional Facilitators

Name	Region	Skills	Interests
Scott Valcourt	Northeast	accounts bash batch-jobs big-data compiling cyberinfrastructure data-handling data-lifecycle more...
John Goodhue	CAREERS, Northeast	internet nese networking programming python sciencedmz storage
Adrian Del Maestro	Northeast	batch-jobs c++ compiling cpus cyberinfrastructure Data-Management debugging gpus more...
Martin Cuma	RMACC	bash batch-jobs c++ compiling debugging distributed-computing environment-modules job-sizing more...	bash batch-jobs c++ compiling comsol conda containers cpus more...
Kaylea Nelson	CAREERS	astrophysics bash batch-jobs Cluster-support compiling conda debugging environment-modules more...	acls astrophysics bash batch-jobs c++ compiling conda Data-facing more...
Neil McGlohon	CAREERS	HPC hpc-getting-started mpi programming	distributed-computing HPC HPCs parallelism python
Andrew Sherman	CAREERS	compiling cuda debugging distributed-computing HPC hpc-getting-started matlab mpi more...
Grant Scott	Great Plains	AI aws bash big-data c++ Cloud/vm compiling containers more...	Cloud/vm Data-facing Management/Professional Development Researcher-facing
Keri Toksu	Northeast	bash batch-jobs hpc-getting-started natural-language-processing open-on-demand programming Programming-languages-and-software-support python more...
Gaurav Khanna	CAREERS, Northeast	astrophysics bash batch-jobs c++ Cloud/vm Cluster-support compiling cpus more...
Brian Gregor	Northeast	big-data cpus data-handling debugging gpus Hardware hardware-architecture job-sizing more...
David Oury	Northeast	programming programming-best-practices python r tensorflow unix-environment
Seung Woo Son	Northeast	ceph cyberinfrastructure debugging distributed-computing file-system hadoop mpi parallelism more...
Shaohao Chen	Northeast	AI bash batch-jobs compiling containers cuda debugging deep-learning more...
Shawn Doughty	Northeast	accounts aws batch-jobs cgroups containers cpus desktops fastx more...
Spencer Pruitt	Northeast	batch-jobs computational-chemistry cpus debugging distributed-computing Hardware HPC-Operations mpi more...
Shawn Sivy	CAREERS	acls backup bash batch-jobs cifs compiling containers cpus more...

Researchers and Educators

Name	Skills	Interests
Gaurav Khanna	astrophysics bash batch-jobs c++ Cloud/vm Cluster-support compiling cpus more...

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