biology

Mentors and Regional Facilitators

Name	Region	Skills	Interests
Alyssa Pivirotto	ACCESS CSSN, Campus Champions	bash bioinformatics biology conda data-analysis data-science genomics github more...	arcgis machine-learning
David Carlson	ACCESS CSSN	bash bioinformatics biology gatk genomics ookami python r more...
diana Trotman	CAREERS	benchmarking biology cloud-open-source cloudlab community-outreach computational-chemistry cybersecurity data-analysis more...	benchmarking bioinformatics biology cleanup cloud-commercial computational-chemistry containers cybersecurity more...
Daniel Morales	Campus Champions	access access-allocations ACCESS-credits adding-users allocation-management anaconda bash batch-jobs more...	access access-allocations allocation-management bioinformatics biology community-outreach conda deep-learning more...
Deborah Penchoff	Campus Champions	abstract access access-account adding-users affiliations ai allocation-management allocation-time more...
Diana Toups Dugas	RMACC, SWEETER, Campus Champions	bioinformatics biology genomics proposal-development research-facilitation software-carpentry training workforce-development
Elie Alhajjar	ACCESS CSSN, CCMNet	biology c++ community-outreach data-science julia mathematica matlab professional-development more...	ai big-data biology c++ community-outreach data-analysis data-science deep-learning more...
Feseha Abebe-Akele	CCMNet	abstract access access-account access-allocations ACCESS-credits ACCESS-website account adding-users more...
Jeffrey Weekley	Campus Champions	administering-hpc archiving biology community-outreach condo containers cybersecurity data-compliance more...
Jason Wells	ACCESS CSSN, Campus Champions	administering-hpc api bash batch-jobs biology cluster-management cluster-support comsol more...
Amy Koshoffer	Campus Champions	biology data-lifecycle data-management doi file-formats workflow	archiving backup biology data-lifecycle data-management doi file-formats file-transfer more...
shuai liu	ACCESS CSSN	ai anaconda azure big-data bioinformatics biology containers data-analysis more...
Nicholas Danes	Campus Champions, MINES	anaconda biology compiling cpu-bound distributed-computing fluid-dynamics fortran job-array more...	ai aws azure benchmarking big-data c c++ deep-learning more...
Nicholas Panchy	Campus Champions	bash bioinformatics biology conda easybuild genomics modules open-ondemand more...
Rob Harbert	Northeast	anaconda batch-jobs big-data bioinformatics biology distributed-computing genomics gis more...
Xiaoqin Huang	ACCESS CSSN	access-account ACCESS-credits adding-users affinity-group allocations-extension allocations-proposal amber anaconda more...	ACCESS-credits ACCESS-website adding-users affinity-group allocations-extension allocations-proposal amber anaconda more...
William Lai	ACCESS CSSN	administering-hpc ai anaconda archiving backup bash bioinformatics biology more...	administering-hpc ai archiving bash benchmarking big-data bioinformatics biology more...

Users

Name	Roles	Skills	Interests
Aidan McCrillis	student facilitator	bioinformatics biology data-science python
Chitral Samala	student facilitator	biology community-outreach data-transfer jupyterhub management matlab netcdf programming more...	c c++ cybersecurity gis java julia science-gateway software-installation more...
diana Trotman	student facilitator rcf mentee	benchmarking biology cloud-open-source cloudlab community-outreach computational-chemistry cybersecurity data-analysis more...	benchmarking bioinformatics biology cleanup cloud-commercial computational-chemistry containers cybersecurity more...
Emma Strand	student facilitator	anaconda archiving bash big-data bioinformatics biology community-outreach data-analysis more...
Eren Ada	student facilitator	anaconda bash big-data bioinformatics biology community-outreach compiling dependencies more...
Gregory Ezike	student facilitator	bash biology c c++ github java mpi programming more...
Chris Hemme	researcher/educator	anaconda big-data bioinformatics biology data-analysis genomics r	anaconda big-data bioinformatics biology data-analysis genomics python r
Hening Cui	student facilitator	bioinformatics biology cleanup data-analysis java machine-learning natural-language-processing neural-networks more...
Ifeoma Ugwuanyi	student facilitator	bioinformatics biology data-analysis genomics python r sql	anaconda big-data bioinformatics biology data-analysis data-wrangling genomics python more...
John Acheampong	student facilitator	biology conda github programming-best-practices python software-installation
Kenneth Acosta	student facilitator	bash bioinformatics biology conda genomics github pip python more...	batch-jobs cluster-management cluster-support data-management data-transfer distributed-computing programming-best-practices scheduling
Vinayak Mathur	researcher/educator	bioinformatics biology genomics
Lenore Martin	researcher/educator	administering-hpc amber anaconda backup bash bioinformatics biology charmm more...	administering-hpc ai amber anaconda bioinformatics biology charmm community-outreach more...
Xiaoluo Jiao	student facilitator	bioinformatics biology cleanup data-management data-reproducibility data-wrangling genomics git more...	python sql
Matt Ferguson	researcher/educator	access ai anaconda bash bioinformatics biology c charmm more...	access access-account access-allocations ACCESS-credits ACCESS-website ai amber anaconda more...
Sanguthevar Ra…	researcher/educator	ai big-data bioinformatics biology computational-chemistry data-analysis data-science deep-learning more...
William Feng	student facilitator	bioinformatics biology data-analysis genomics java programming programming-best-practices python more...
Zoe Reich	student facilitator	biology data-analysis r	bioinformatics community-outreach genomics professional-development project-management python research-facilitation research-grants

Projects

Project Title	Project Institution	Project Owner	Tags	Status
		Gaurav Khanna
		Joel Wilmore
		Avery Leider
		Winslow Hansen
		Andrea Elledge
		Bruce Segee
		Gaurav Khanna
		Vinayak Mathur
		Gaurav Khanna
		Gaurav Khanna
		Vinayak Mathur
		Gaurav Khanna
		Gaurav Khanna

Blog Entries

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Affinity Groups

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Announcements

Title	Date
Ookami Webinar	02/14/24
Open Call: Minisymposia for PASC24	10/05/23

Upcoming Events & Trainings

Title	Date
phenoACCESS-24: Workshop on Research Computing and Plant Phenotyping	10/07/24

Topics from Ask.CI

Knowledge Base Resources

Title	Category	Tags	Skill Level

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Engagements

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People with Expertise

Kaitlyn Varela

Programs

ACCESS CSSN

Roles

student-facilitator

Photo of Kaitlyn Varela

Expertise

biology

community-outreach

data-analysis

optimization

Sanguthevar Rajasekaran

University of Connecticut

Programs

CAREERS

Roles

researcher/educator

Expertise

ai

big-data

biology

computational-chemistry

+15 more tags

Alyssa Pivirotto

Bryn Mawr College

Programs

ACCESS CSSN, Campus Champions

Roles

research computing facilitator, cssn

Expertise

bash

biology

conda

data-analysis

+5 more tags

People with Interest

diana Trotman

Queens borough community college

Programs

CAREERS

Roles

student-facilitator, research computing facilitator, mentee

Student facilitator

Interests

benchmarking

bioinformatics

biology

cleanup

cloud-commercial

+29 more tags

Oriana Silva

University of North Texas

Programs

ACCESS CSSN

Roles

student-facilitator

Oriana Silva

Interests

abstract

aces

affiliations

ai

benchmarking

+43 more tags

Frédéric Chevalier

Texas Biomedical Research Institute

Programs

Campus Champions

Roles

researcher/educator, domain champion

Interests

benchmarking

bioinformatics

biology

data-reproducibility

image-processing

+3 more tags