biology

Mentors and Regional Facilitators

Name	Region	Skills	Interests
Rob Harbert	Northeast	anaconda array-job batch-jobs big-data bioinformatics biology cluster distributed-computing more...
Diana Dugas	RMACC, SWEETER, Campus Champions	bioinformatics biology cyberinfrastructure genomics hpc-getting-started proposal-development research-computing research-facilitation more...
Nicholas Danes	Campus Champions, MINES	anaconda array-job biology compiling computational-fluid-dynamics cpu-bound distributed-computing domain-specific more...	ai aws azure benchmarking big-data c c++ cloud more...
Jason Wells		administering-hpc api bash batch-jobs biology cloud cluster cluster-management more...

Topics from Ask.CI

Affinity Groups

There are no Affinity Groups associated with this topic. View All Affinity Groups.

Users

Name	Roles	Skills	Interests
Kenneth Acosta	student facilitator	bash bioinformatics biology conda genomics github pip python more...	batch-jobs cloud cluster cluster-management cluster-support data-management data-transfer distributed-computing more...
Zoe Reich	student facilitator	biology data-analysis r	bioinformatics community-outreach genomics professional-development project-management python research-computing research-facilitation more...
Chris Hemme	researcher/educator	anaconda big-data bioinformatics biology data-analysis genomics r research-computing more...	anaconda big-data bioinformatics biology data-analysis genomics python r more...
John Acheampong	student facilitator	anatomy biology conda github notebooks programming-best-practices python software-installation more...
Vinayak Mathur	researcher/educator	bioinformatics biology genomics
Eren Ada	student facilitator	anaconda array-job bash big-data bioinformatics biology collaboration community-outreach more...
Emma Strand	student facilitator	anaconda archiving bash big-data bioinformatics biology cluster community-outreach more...
Xiaoluo Jiao	student facilitator	bioinformatics biology cleanup data-management data-reproducibility data-science-support data-wrangling genomics more...	python sql
Chitral Samala	student facilitator	biology community-outreach data-transfer jupyterhub management/professional-development matlab netcdf notebooks more...	c c++ cybersecurity geographic-information-system java julia programming-for-hpc programming-languages more...
Ifeoma Ugwuanyi	student facilitator	bioinformatics biology data-analysis genomics hpc notebooks python r more...	anaconda big-data bioinformatics biology data-analysis data-wrangling genomics hpc more...
Hening Cui	student facilitator	bioinformatics biology cleanup data-analysis java machine-learning natural-language-processing neural-networks more...
Mitu Patel	student facilitator	arcgis biology data-science-support geographic-information-system publication research-grants research-software scholarly-communication more...	arcgis biology desktop documentation general geographic-information-system publication research-grants more...
Gregory Ezike	student facilitator	bash biology c c++ cloud github java mpi more...

Resources

There are no resources associated with this topic. Please check back often as more resources are added regularly, or view All Resources.

Projects

Project Title	Project Institution	Project Owner	Tags	Status
Metagenomic analysis to identify gene clusters associated with IgA production	SUNY Upstate Medical University	Joel Wilmore	bioinformatics, biology, collaboration, genomics, python, r, research-computing, research-facilitation	In Progress
Simulating 21st century boreal forests and fire with a state-of-the-art process-based model	Cary Institute	Winslow Hansen	biology, cluster, cluster-support, cpus, dependencies, deployment, netcdf, performance-tuning, r	In Progress
Host-symbiont population genomics - analyzing the intraspecific variability of methanogenic archaeal endosymbionts of genus Methanocorpusculum hosted by a marine anaerobic ciliate Metopus sp. (Metopida)	University of Rhode Island -- Bay Campus	Gaurav Khanna	bioinformatics, biology, cluster, genomics	In Progress
High throughput Python pipeline to identify Horizontal Gene Transfer	Cabrini University	Vinayak Mathur	bioinformatics, biology, data-wrangling, genomics, github, python, workflow	In Progress
Assembly and Taxonomic Profiling of Metagenomic Sequences using Deep Learning	University of Rhode Island	Gaurav Khanna	ai, bioinformatics, biology, deep-learning, domain-specific, gpus, hardware, machine-learning, neural-networks, python	Complete

Blog Entries

There are no Blog Entries associated with this topic.