python

Resources

Title	Category	Tags	Skill Level
Cornell Virtual Workshop	Learning	performance-tuning, parallelism, python, r, matlab, slurm, mpi, cuda, file-transfer, globus	Beginner, Intermediate, Advanced, Expert
HPC University	Learning	performance, python, r, matlab, mpi, compiling, debugging, professional-development, cyberinfrastructure	Beginner, Intermediate, Advanced, Expert
XSEDE Roadmap Training	Learning	scheduler, mpi, globus, r, python, matlab, visualization, xsede	Beginner, Intermediate, Advanced, Expert

Projects

Project Title	Project Institution	Project Owner	Tags	Status
Deep convolutional neural networks (dCNN) for image segmentation, instance labeling, and tracking.	University of Delaware	Anita Schwartz	bash, bioinformatics, computational-chemistry, debugging, domain-specific, hpc, machine-learning, programming, programming-languages-and-software-support, python, Researcher-facing, scripting, slurm, software-installation, tensorflow, visualization	In Progress
Deep learning for biomedical image analysis	Southern Connecticut State University	Binlin Wu	big-data, AI, deep-learning, machine-learning, python, matlab, gpus, tensorflow	In Progress
An optimized search algorithm for gravitational waves from post-merger remnants	University of Rhode Island	Gaurav Khanna	astrophysics, conda, cuda, gpus, hpc, hpc-getting-started, parallelism, parallelization, python	In Progress
Project WiCCED ML	University of Delaware	Anita Schwartz	Researcher-facing, domain-specific, machine-learning, docker, programming-languages-and-software-support, programming-best-practices, python, r, software-installation, tensorflow, tuning, spark, kubernetes, jupyterhub, hadoop	In Progress
Assembly and Taxonomic Profiling of Metagenomic Sequences using Deep Learning	University of Rhode Island	Gaurav Khanna	AI, bioinformatics, biology, deep-learning, domain-specific, gpus, hardware, machine-learning, neural-network, python	In Progress
Establish Computational Analysis Infrastructure for the CCRI 16-inch Telescope.	Community College of Rhode Island	Gaurav Khanna	astrophysics, cyberinfrastructure, data-analysis, documentation, git, hpc, python, remote-servers, research-facilitation, scripting	In Progress

Student Facilitators

Name	Skills	Interests
Alex Flosdorf	bash c++ programming programming-best-practices programming-languages-and-software-support python
Richa Gautam	aws big-data compiling conda data-handling data-wrangling debugging machine-learning more...	AI big-data data-handling data-management data-wrangling deep-learning linear-programming machine-learning more...
Bill Ni	aws c++ linear-programming parallelism pip programming project-management python more...	AI astrophysics aws bash big-data bioinformatics c++ cybersecurity more...
Matthew Smalley	bash c++ containers cybersecurity file-system gce networking programming more...
Dylan Le	bash c++ monte-carlo mpi programming programming-best-practices programming-languages-and-software-support python more...	AI big-data cloud-commercial cloud-open-source cluster-support cybersecurity deep-learning hpc more...
Richard Le	bash c++ compiling debugging parallelism pip programming-best-practices programming-languages-and-software-support more...	AI big-data deep-learning image-processing machine-learning natural-language-processing
Hyungil Kye	big-data c++ machine-learning monte-carlo python r sql	big-data machine-learning monte-carlo python r
Jesse Sandberg	Management/Professional Development molecular-dynamics professional-development project-management python workforce-development	bash c++ computational-chemistry deep-learning geographic-information-system machine-learning Management/Professional Development matlab more...
Kenneth Acosta	bash bioinformatics biology conda genomics github pip python more...	batch-jobs cloud cloud/vm cluster cluster-management cluster-support data-management data-transfer more...
Andrew Cheng	programming python r
Christopher Nadeau	astrophysics python quantum-mechanics scripting unix-environment
Girish Ganesan	AI bash bioinformatics c++ computational-chemistry conda deep-learning file-transfer more...	aws azure bash batch-jobs big-data cuda distributed-computing job-sizing more...
Shagesh Sridharan	c++ data-analysis linear-programming machine-learning monte-carlo neural-network notebooks programming more...
Siddh Agarwal	python	bash github hpc-tools natural-language-processing open-source

Mentors and Regional Facilitators

Name	Region	Skills	Interests
John Goodhue	CAREERS, Northeast	internet nese networking programming python sciencedmz storage (d-facing)
Adrian Del Maestro	Northeast	batch-jobs c++ compiling cpus cyberinfrastructure data-management debugging gpus more...
Brett Milash	RMACC	bioinformatics hpc python
Martin Cuma	RMACC	bash batch-jobs c++ compiling debugging distributed-computing environment-modules job-sizing more...	bash batch-jobs c++ compiling comsol conda containers cpus more...
Kaylea Nelson	CAREERS	astrophysics bash batch-jobs cluster-support compiling conda debugging environment-modules more...	acls astrophysics bash batch-jobs c++ compiling conda Data-facing more...
Grant Scott	Great Plains	AI aws bash big-data c++ cloud/vm compiling containers more...	cloud/vm Data-facing Management/Professional Development Researcher-facing
Carrie Brown	Great Plains	bash batch-jobs conda condor containers data-wrangling distributed-computing fastx more...
Timothy Middelkoop	Great Plains	batch-jobs containers cyberinfrastructure hpc-getting-started networking python workforce-development
Keri Toksu	Northeast	bash batch-jobs hpc-getting-started natural-language-processing open-on-demand programming programming-languages-and-software-support python more...
Thomas Langford	CAREERS	big-data containers data-handling monte-carlo mpi parallelism parallelization particle-physics more...
George Young	CAREERS	AI conda desktops machine-learning matlab project-management python	julia machine-learning matlab python r
James Deaton	Great Plains	archiving bash cgroups community-outreach conda containers cyberinfrastructure data-wrangling more...
Rob Coyne	CAREERS	astrophysics python	astrophysics bash condor machine-learning mpi parallelism python scripting more...
Brian Gregor	Northeast	big-data cpus data-handling debugging gpus hardware hardware-architecture job-sizing more...
David Oury	Northeast	programming programming-best-practices python r tensorflow unix-environment
Jacob Pessin	Northeast	aws bash batch-jobs big-data bioinformatics cloud-storage (s-facing) cloud/vm cluster-support more...
Juan Vanegas	Northeast	bash batch-jobs bioinformatics compiling conda environment-modules hpc hpc-cluster-build more...
Shawn Doughty	Northeast	account aws batch-jobs cgroups containers cpus desktops fastx more...
Spencer Pruitt	Northeast	batch-jobs computational-chemistry cpus debugging distributed-computing hardware hpc-operations hpc-storage (s-facing) more...
Wirawan Purwanto	Northeast	bash batch-jobs c++ mpi python scripting
Shawn Sivy	CAREERS	acls backup bash batch-jobs cifs compiling containers cpus more...

Researchers and Educators

Name	Skills	Interests
Rob Coyne	astrophysics python	astrophysics bash condor machine-learning mpi parallelism python scripting more...

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python

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Mentors and Regional Facilitators

Researchers and Educators

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