workflow

Mentors and Regional Facilitators

Name	Region	Skills	Interests
Braeden Singleton	Open OnDemand	administering-hpc api archiving automation cluster-management computer-science containers data-management more...	authentication benchmarking hpc-tools memory networking optimization puppet simulation more...
Cyd Burrows-Sc…	Campus Champions, CCMNet	allocation-users arcgis aws azure cloud-commercial cybersecurity data-lifecycle data-management more...
Christina Divoll	Campus Champions, ACCESS CSSN	acls Admin and Support administering-hpc bash cluster-support Data Storage data-lifecycle data-management more...	Cloud
Craig Gross	Campus Champions, CCMNet	bash c c++ conda data-analysis data-science git github more...
Carolina Roe-Raymond	CCMNet	anaconda arcgis big-data biology conda css data data-analysis more...	big-data image-processing paraview visIt
David Liu	CCMNet, ACCESS CSSN	abstract ACCESS ACCESS-account ACCESS-allocations account administering-hpc affiliations ai more...	ai cognitive-bias computer-vision deep-learning generative-ai llm machine-learning NAIRR-pilot more...
Feseha Abebe-Akele	CCMNet	abstract ACCESS ACCESS-account ACCESS-allocations ACCESS-credits ACCESS-website adding-users affiliations more...	ACES administering-hpc ai artificial-intelligence aws azure bash batch-jobs more...
Ibrahim Sheikh	CAREERS	benchmarking community-outreach debugging deep-learning dependencies encryption gis git more...	backup benchmarking community-outreach computational-chemistry deep-learning file-formats gamess gis more...
Jacob Fosso Tande	ACCESS CSSN, Campus Champions, CCMNet	abstract ACCESS ACCESS-allocations administering-hpc aws azure bash benchmarking more...	administering-hpc cgroups cluster cluster-management composable-systems cyverse data-compliance data-security more...
Amy Koshoffer	Campus Champions	biology data-lifecycle data-management doi file-formats workflow	archiving backup biology data-lifecycle data-management doi file-formats file-transfer more...
Kevin Van Slyke	ACCESS CSSN, Campus Champions, CCMNet	archiving atmospheric-physics batch-jobs campus-champions checkpoint containers documentation easybuild more...	artificial-intelligence dft field-theory hpc-arch-and-perf hpc-cluster-architecture hpc-cluster-build hpc-getting-started hpc-operations more...
shuai liu	ACCESS CSSN	ai anaconda azure big-data bioinformatics biology containers data-analysis more...
Mary Ellen Sloane	Campus Champions	campus-champions community-outreach data data-lifecycle data-management data-provenance data-science management more...	archiving campus-champions change-organization community-outreach data data-access-protocols data-lifecycle data-management more...
Margarete Jadamec		ACCESS automation bash batch-jobs big-data c c++ cluster more...
Nil Mu	CCMNet	artificial-intelligence bioinformatics computer-science data-science genomics hpc-arch-and-perf hpc-cluster-architecture hpc-operations more...	artificial-intelligence bioinformatics genomics hpc-cluster-architecture performance-tuning workflow
Riley Epperson	CCMNet, Campus Champions	administering-hpc ansible archiving automation backup bash cleanup cluster more...	abaqus ACCESS ACCESS-allocations ai api archiving authentication aws more...

Users

Name	Roles	Skills	Interests
Ibrahim Sheikh	student facilitator mentor regional facilitator researcher/educator rcf	benchmarking community-outreach debugging deep-learning dependencies encryption gis git more...	backup benchmarking community-outreach computational-chemistry deep-learning file-formats gamess gis more...
Katie Salas	student facilitator	community-outreach data-analysis data-lifecycle data-wrangling python r sql workflow
Sander Cohen-Janes	student facilitator	anaconda bash benchmarking dft gaussian github mathematica python more...	c git python r xsede

Projects

Project Title	Project Institution	Project Owner	Tags	Status
High throughput Python pipeline to identify Horizontal Gene Transfer	Cabrini University	Vinayak Mathur	bioinformatics, biology, data-wrangling, genomics, github, python, workflow	Halted
Developing subject-specific models for the study of traumatic brain injury	Robert Morris University	Rika Carlsen	finite-element-analysis, image-processing, matlab, programming, unix-environment, workflow	Complete
Computational pipelines for the analysis of plastic-degrading genes	University of Rhode Island	Gaurav Khanna	bioinformatics, biology, workflow, workforce-development	Complete

Blog Entries

There are no Blog Entries associated with this topic.

Organizations

Globus

Website

https://www.globus.org

cloud-storage scripting data-management data-management-software data-transfer

WCI

cloud-computing visualization big-data data-analysis deep-learning

Affinity Groups

Logo	Name	Description	Tags	Join
	Pegasus	Pegasus is a workflow management system, which enables you to run computational workflows across ACCESS resources. Users will seamlessly be able to orchestrate jobs and data movements at different…	workflow pegasus	Login to join

Announcements

Title	Date
Register for HTC25: Connect with the High Throughput Computing Community	03/18/25
ACCESS Pegasus – Hosted Workflow Environment with HTCondor Annex	09/28/22

Upcoming Events & Trainings

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Topics from Ask.CI

Knowledge Base Resources

Title	Category	Tags	Skill Level
AI powered VsCode Editor	Tool	ai, machine-learning, workflow, natural-language-processing, programming, python, sas	Beginner, Intermediate
Optimizing Research Workflows - A Documentation of Snakemake	Docs	documentation, data-analysis, data-reproducibility, workflow, bioinformatics, data-science, python	Intermediate, Advanced
Use Windows Subsystem for Linux for HPC Command Line Access from Windows	Tool	workflow, ssh	Beginner

People with Expertise

Ibrahim Sheikh

CUNY School of Professional Studies

Programs

CAREERS

Roles

student-facilitator, mentor, regional facilitator, researcher/educator, research computing facilitator

Expertise

benchmarking

community-outreach

debugging

deep-learning

dependencies

+20 more tags

Sander Cohen-Janes

Brandeis University

Programs

CAREERS

Roles

student-facilitator

Expertise

anaconda

bash

benchmarking

dft

gaussian

+10 more tags

Katie Salas

New York City College of Technology

Programs

CAREERS

Roles

student-facilitator

Expertise

community-outreach

data-analysis

python

+3 more tags

People with Interest

Adedeji Adekunle

Rutgers University, Camden

Programs

CAREERS

Roles

student-facilitator

Interests

archiving

azure

big-data

bioinformatics

biology

+46 more tags

Lenore Martin

University of Rhoide Island

Programs

CAREERS

Roles

researcher/educator

Lenore in office

Interests

administering-hpc

ai

amber

anaconda

bioinformatics

+53 more tags

diana Trotman

Queens borough community college

Programs

CAREERS

Roles

student-facilitator, research computing facilitator, mentee

Student facilitator

Interests

benchmarking

bioinformatics

biology

cleanup

cloud-commercial

+29 more tags