workflow

Mentors and Regional Facilitators

Name	Region	Skills	Interests
Cyd Burrows-Sc…	Campus Champions, CCMNet	allocation-users arcgis aws azure cloud-commercial cybersecurity data-lifecycle data-management more...
Christina Divoll	Campus Champions, ACCESS CSSN	acls Admin and Support administering-hpc bash cluster-support Data Storage data-lifecycle data-management more...	Cloud
Craig Gross	Campus Champions, CCMNet	bash c c++ conda data-analysis data-science git github more...
Feseha Abebe-Akele	CCMNet	abstract ACCESS ACCESS-account ACCESS-allocations ACCESS-credits ACCESS-website account adding-users more...
Ibrahim Sheikh	CAREERS	benchmarking community-outreach debugging deep-learning dependencies encryption gis git more...	backup benchmarking community-outreach computational-chemistry deep-learning file-formats gamess gis more...
Jacob Fosso Tande	ACCESS CSSN, Campus Champions, CCMNet	abstract ACCESS ACCESS-allocations administering-hpc aws azure bash benchmarking more...	administering-hpc cgroups cluster cluster-management composable-systems cyverse data-compliance data-security more...
Amy Koshoffer	Campus Champions	biology data-lifecycle data-management doi file-formats workflow	archiving backup biology data-lifecycle data-management doi file-formats file-transfer more...
shuai liu	ACCESS CSSN	ai anaconda azure big-data bioinformatics biology containers data-analysis more...

Users

Name	Roles	Skills	Interests
Ibrahim Sheikh	student facilitator mentor regional facilitator researcher/educator rcf	benchmarking community-outreach debugging deep-learning dependencies encryption gis git more...	backup benchmarking community-outreach computational-chemistry deep-learning file-formats gamess gis more...
Katie Salas	student facilitator	community-outreach data-analysis data-lifecycle data-wrangling python r sql workflow
Sander Cohen-Janes	student facilitator	anaconda bash benchmarking dft gaussian github mathematica python more...	c git python r xsede

Projects

Project Title	Project Institution	Project Owner	Tags	Status
High throughput Python pipeline to identify Horizontal Gene Transfer	Cabrini University	Vinayak Mathur	bioinformatics, biology, data-wrangling, genomics, github, python, workflow	Halted
Developing subject-specific models for the study of traumatic brain injury	Robert Morris University	Rika Carlsen	finite-element-analysis, image-processing, matlab, programming, unix-environment, workflow	Complete
Computational pipelines for the analysis of plastic-degrading genes	University of Rhode Island	Gaurav Khanna	bioinformatics, biology, workflow, workforce-development	Complete

Blog Entries

There are no Blog Entries associated with this topic.

Organizations

Globus

Website

https://www.globus.org

cloud-storage scripting data-management data-management-software data-transfer

WCI

cloud-computing visualization big-data data-analysis deep-learning

Affinity Groups

Logo	Name	Description	Tags	Join
	Pegasus	Pegasus is a workflow management system, which enables you to run computational workflows across ACCESS resources. Users will seamlessly be able to orchestrate jobs and data movements at different…	workflow pegasus	Login to join

Announcements

Title	Date
Register for HTC25: Connect with the High Throughput Computing Community	03/18/25
ACCESS Pegasus – Hosted Workflow Environment with HTCondor Annex	09/28/22

Upcoming Events & Trainings

Title	Date
Adapting Workflows for High Throughput Bioinformatics	5/20/25
COMPLECS: Code Migration	6/12/25
COMPLECS: Code Migration	6/12/25

Topics from Ask.CI

Knowledge Base Resources

Title	Category	Tags	Skill Level
AI powered VsCode Editor	Tool	ai, machine-learning, workflow, natural-language-processing, programming, python, sas	Beginner, Intermediate
Containerized Jupyter Notebooks for HPCs	Learning	cloud, cloud-computing, openstack, scratch, data-management, data-reproducibility, github, workflow, open-ondemand, administering-hpc, configuration-automation, hpc-getting-started, hpc-tools, deployment, scripting, conda, jupyterhub, programming-best-practices, python, mpi, containers, docker, singularity	Intermediate
How the Little Jupyter Notebook Became a Web App: Managing Increasing Complexity with nbdev	Learning	data-sharing, data-management-software, data-reproducibility, github, workflow, astrophysics, data-science, novel-accelerators, computational-chemistry, genomics, materials-science, gravitational-waves, oceanography, particle-physics, physiology, psychology, quantum-computing, quantum-mechanics, biology, science-gateway, software-carpentry, jupyterhub, programming, python	Beginner, Intermediate, Advanced

Engagements

There are no Engagements associated with this topic. View All Engagements.

People with Expertise

Frédéric Chevalier

Texas Biomedical Research Institute

Programs

Campus Champions

Roles

researcher/educator, domain champion

Expertise

anaconda

bash

batch-jobs

biology

+21 more tags

Cyd Burrows-Schilling

University of California - San Diego

Programs

Campus Champions, CCMNet

Roles

mentor, CampusChampionsAdmin, research computing facilitator, Affinity Group Leader, CCMNet

picture of Cyd Burrows

Expertise

allocation-users

arcgis

aws

azure

cloud-commercial

+10 more tags

Amy Koshoffer

University of Cincinnati-Main Campus

Programs

Campus Champions

Roles

research computing facilitator

Expertise

biology

data-management

doi

file-formats

+1 more tags

People with Interest

David Warden

SUNY Geneseo

Programs

Campus Champions, CCMNet, ACCESS CSSN

Roles

research computing facilitator, cssn, CCMNet

black and white analog photo print portrait of David Warden in a darkroom processing tray

Interests

administering-hpc

ai

anaconda

azure

backup

+53 more tags

Programs

CCMNet

Roles

CCMNet

Interests

abstract

access

access-account

access-allocations

access-credits

+190 more tags

diana Trotman

Queens borough community college

Programs

CAREERS

Roles

student-facilitator, research computing facilitator, mentee

Student facilitator

Interests

benchmarking

bioinformatics

biology

cleanup

cloud-commercial

+29 more tags