workflow

Mentors and Regional Facilitators

Name	Region	Skills	Interests
Cyd Burrows-Sc…	Campus Champions	arcgis aws azure cloud-commercial cybersecurity data-lifecycle data-management data-wrangling more...
Christina Divoll	Campus Champions, ACCESS CSSN	acls Admin and Support administering-hpc bash cluster-support Data Storage data-lifecycle data-management more...	Cloud
Craig Gross	Campus Champions, CCMNet	bash c c++ conda data-analysis data-science git github more...
Feseha Abebe-Akele	CCMNet	abstract ACCESS ACCESS-account ACCESS-allocations ACCESS-credits ACCESS-website account adding-users more...
Ibrahim Sheikh	CAREERS	benchmarking community-outreach debugging deep-learning dependencies encryption gis git more...	backup benchmarking community-outreach computational-chemistry deep-learning file-formats gamess gis more...
Amy Koshoffer	Campus Champions	biology data-lifecycle data-management doi file-formats workflow	archiving backup biology data-lifecycle data-management doi file-formats file-transfer more...
shuai liu	ACCESS CSSN	ai anaconda azure big-data bioinformatics biology containers data-analysis more...

Users

Name	Roles	Skills	Interests
Ibrahim Sheikh	student facilitator mentor regional facilitator researcher/educator rcf	benchmarking community-outreach debugging deep-learning dependencies encryption gis git more...	backup benchmarking community-outreach computational-chemistry deep-learning file-formats gamess gis more...
Katie Salas	student facilitator	community-outreach data-analysis data-lifecycle data-wrangling python r sql workflow
Sander Cohen-Janes	student facilitator	anaconda bash benchmarking dft gaussian github mathematica python more...	c git python r xsede

Projects

Project Title	Project Institution	Project Owner	Tags	Status
High throughput Python pipeline to identify Horizontal Gene Transfer	Cabrini University	Vinayak Mathur	bioinformatics, biology, data-wrangling, genomics, github, python, workflow	Halted
Developing subject-specific models for the study of traumatic brain injury	Robert Morris University	Rika Carlsen	finite-element-analysis, image-processing, matlab, programming, unix-environment, workflow	Complete
Computational pipelines for the analysis of plastic-degrading genes	University of Rhode Island	Gaurav Khanna	bioinformatics, biology, workflow, workforce-development	Complete

Blog Entries

There are no Blog Entries associated with this topic.

Organizations

Globus

Website

https://www.globus.org

cloud-storage scripting data-management data-management-software data-transfer

WCI

cloud-computing visualization big-data data-analysis deep-learning

Affinity Groups

Logo	Name	Description	Tags	Join
	Pegasus	Pegasus is a workflow management system, which enables you to run computational workflows across ACCESS resources. Users will seamlessly be able to orchestrate jobs and data movements at different…	workflow pegasus	Login to join

Announcements

Title	Date
ACCESS Pegasus – Hosted Workflow Environment with HTCondor Annex	09/28/22

Upcoming Events & Trainings

Title	Date
Pegasus Workflows Office Hours	2/28/25
Pegasus Workflows Office Hours	3/07/25
Globus Office Hours	3/12/25

Topics from Ask.CI

Knowledge Base Resources

Title	Category	Tags	Skill Level
AI powered VsCode Editor	Tool	ai, machine-learning, workflow, natural-language-processing, programming, python, sas	Beginner, Intermediate
Containerized Jupyter Notebooks for HPCs	Learning	cloud, cloud-computing, openstack, scratch, data-management, data-reproducibility, github, workflow, open-ondemand, administering-hpc, configuration-automation, hpc-getting-started, hpc-tools, deployment, scripting, conda, jupyterhub, programming-best-practices, python, mpi, containers, docker, singularity	Intermediate
How the Little Jupyter Notebook Became a Web App: Managing Increasing Complexity with nbdev	Learning	data-sharing, data-management-software, data-reproducibility, github, workflow, astrophysics, data-science, novel-accelerators, computational-chemistry, genomics, materials-science, gravitational-waves, oceanography, particle-physics, physiology, psychology, quantum-computing, quantum-mechanics, biology, science-gateway, software-carpentry, jupyterhub, programming, python	Beginner, Intermediate, Advanced

Engagements

There are no Engagements associated with this topic. View All Engagements.

People with Expertise

Calloway Sutton

Indiana University

Programs

ACCESS CSSN

Roles

cssn

Expertise

access

access-allocations

+269 more tags

Ibrahim Sheikh

CUNY School of Professional Studies

Programs

CAREERS

Roles

student-facilitator, mentor, regional facilitator, researcher/educator, research computing facilitator

Expertise

benchmarking

community-outreach

debugging

deep-learning

dependencies

+20 more tags

Katie Salas

New York City College of Technology

Programs

CAREERS

Roles

student-facilitator

Expertise

community-outreach

data-analysis

python

+3 more tags

People with Interest

Adedeji Adekunle

Rutgers University, Camden

Programs

CAREERS

Roles

student-facilitator

Interests

archiving

azure

big-data

bioinformatics

biology

+46 more tags

Frédéric Chevalier

Texas Biomedical Research Institute

Programs

Campus Champions

Roles

researcher/educator, domain champion

Interests

benchmarking

bioinformatics

biology

data-reproducibility

image-processing

+3 more tags

Timothy Middelkoop

Internet2

Programs

ACCESS CSSN, Campus Champions, CCMNet, Great Plains

Roles

mentor, regional facilitator, researcher/educator, research computing facilitator, CCMNet

Interests

abstract

access

access-allocations

access-credits

administering-hpc

+144 more tags