bioinformatics

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Project Title	Project Institution	Project Owner	Tags	Status
Deep convolutional neural networks (dCNN) for image segmentation, instance labeling, and tracking.	University of Delaware	Anita Schwartz	bash, bioinformatics, computational-chemistry, debugging, domain-specific, hpc, machine-learning, programming, programming-languages, python, researcher-facing, scripting, slurm, software-installation, tensorflow, visualization	Complete
Parallel analysis of variants in multiple bear genomes: algorithmic solutions	Rutgers University–Camden	Galen Collier	Data-Facing, bioinformatics, domain-specific, researcher-facing	Complete
Assembly and Taxonomic Profiling of Metagenomic Sequences using Deep Learning	University of Rhode Island	Gaurav Khanna	ai, bioinformatics, biology, deep-learning, domain-specific, gpus, hardware, machine-learning, neural-networks, python	Complete
Host-symbiont population genomics - analyzing the intraspecific variability of methanogenic archaeal endosymbionts of genus Methanocorpusculum hosted by a marine anaerobic ciliate Metopus sp. (Metopida)	University of Rhode Island -- Bay Campus	Gaurav Khanna	bioinformatics, biology, cluster, genomics	In Progress

Name	Roles	Skills	Interests
Chris Hemme	researcher/educator	anaconda big-data bioinformatics biology data-analysis genomics r research-computing more...	anaconda big-data bioinformatics biology data-analysis genomics python r more...
Ying Zhang	mentor researcher/educator	bioinformatics hpc	bioinformatics deep-learning hpc
Kenneth Acosta	student facilitator	bash bioinformatics biology conda genomics github pip python more...	batch-jobs cloud cluster cluster-management cluster-support data-management data-transfer distributed-computing more...
Younes Shafter	student facilitator	anaconda big-data bioinformatics computational-chemistry ddocent deep-learning fastx gatk more...	hpc
Carrie Brown	mentor	bioinformatics cleanup community-outreach data-wrangling distributed-computing genomics github github-pages more...	hpc-getting-started htc
Vinayak Mathur	researcher/educator	bioinformatics biology genomics

Name	Region	Skills	Interests
Brett Milash	RMACC	bioinformatics hpc python
Larry Feinstein	Northeast	bioinformatics simulations
Ying Zhang	CAREERS	bioinformatics hpc	bioinformatics deep-learning hpc
Jacob Pessin	Northeast	aws bash batch-jobs big-data bioinformatics cloud cloud-storage cluster-support more...
Juan Vanegas	Northeast	bash batch-jobs bioinformatics compiling conda environment-modules hpc hpc-cluster-build more...
Rob Harbert	Northeast	anaconda array-job batch-jobs big-data bioinformatics biology cluster distributed-computing more...
Diana Dugas	RMACC, SWEETER	bioinformatics biology cyberinfrastructure genomics hpc-getting-started proposal-development research-computing research-facilitation more...
Carrie Brown	CAREERS	bioinformatics cleanup community-outreach data-wrangling distributed-computing genomics github github-pages more...	hpc-getting-started htc

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