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bioinformatics

Mentors and Regional Facilitators
Name Region Skills Interests
Brett Milash RMACC
Carrie Brown CAREERS, ACCESS CSSN
Balamurugan Desinghu ACCESS CSSN, Campus Champions, CAREERS, Northeast
Diana Toups Dugas RMACC, SWEETER, Campus Champions
Jordan Hayes Campus Champions
Jacob Pessin Northeast
Juan Vanegas Northeast
Larry Feinstein Northeast
shuai liu ACCESS CSSN
Nick Dusek Campus Champions
Nect Admin Great Plains, Northeast, RMACC
Nicholas Panchy Campus Champions
Rob Harbert Northeast
Shane Sanders Campus Champions
Xiaoqin Huang ACCESS CSSN
William Sanders Campus Champions
William Lai ACCESS CSSN
Ying Zhang CAREERS
Yun Shen CAREERS, Northeast, ACCESS CSSN
Users
Name Roles Skills Interests
Aidan McCrillis
student facilitator
Carrie Brown
mentor
steering committee
Balamurugan Desinghu
mentor
researcher/educator
rcf
Emma Strand
student facilitator
Eren Ada
student facilitator
Chris Hemme
researcher/educator
Hening Cui
student facilitator
Ifeoma Ugwuanyi
student facilitator
Kenneth Acosta
student facilitator
Vinayak Mathur
researcher/educator
Lenore Martin
researcher/educator
Xiaoluo Jiao
student facilitator
Sanguthevar Ra…
researcher/educator
William Feng
student facilitator
Ying Zhang
mentor
researcher/educator
Yun Shen
mentor
Projects
Project Title Project Institution Project Owner Tags Status
Characterization of 3D organelle motion using curve fitting and clustering by unsupervised machine learning University of Delaware Anita Schwartz bioinformatics Reviewing Applicants
Develop a data portal for the organization of molecular and imaging data University of Rhode Island -- Bay Campus Gaurav Khanna archiving, aws, bioinformatics, biology, Cloud, Data Storage, docker, genomics In Progress
Computational pipelines for the analysis of plastic-degrading genes University of Rhode Island Gaurav Khanna bioinformatics, biology, workflow, workforce-development In Progress
High throughput Python pipeline to identify Horizontal Gene Transfer Cabrini University Vinayak Mathur bioinformatics, biology, data-wrangling, genomics, github, python, workflow Halted
Metagenomic analysis to identify gene clusters associated with IgA production SUNY Upstate Medical University Joel Wilmore bioinformatics, biology, genomics, python, r, research-facilitation Finishing Up
Deep convolutional neural networks (dCNN) for image segmentation, instance labeling, and tracking. University of Delaware Anita Schwartz bash, bioinformatics, computational-chemistry, debugging, machine-learning, programming, python, scripting, slurm, software-installation, tensorflow Complete
Parallel analysis of variants in multiple bear genomes: algorithmic solutions Rutgers University–Camden Galen Collier Data-Facing, bioinformatics Complete
Assembly and Taxonomic Profiling of Metagenomic Sequences using Deep Learning University of Rhode Island Gaurav Khanna ai, bioinformatics, biology, deep-learning, gpu, hardware, machine-learning, neural-networks, python Complete
Host-symbiont population genomics - analyzing the intraspecific variability of methanogenic archaeal endosymbionts of genus Methanocorpusculum hosted by a marine anaerobic ciliate Metopus sp. (Metopida) University of Rhode Island -- Bay Campus Gaurav Khanna bioinformatics, biology, genomics Complete
Novel Transformer based methods for Automatic Classification and Quantification of Stromule Dynamics from Microscopy Images University of Delaware Anita Schwartz bioinformatics Complete
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People with Expertise

Xiaoqin Huang

Rice University

Programs

ACCESS CSSN

Roles

mentor, research computing facilitator, research software engineer, cssn

xqhuang at Rice

Expertise

William Feng

Rutgers University-New Brunswick

Programs

CAREERS

Roles

student-facilitator

Placeholder headshot

Expertise

Kendra Batchelder

University of Maine at Presque Isle

Programs

Northeast

Roles

student-facilitator

Expertise

People with Interest

Lenore Martin

University of Rhoide Island

Programs

CAREERS

Roles

researcher/educator

Lenore in office

Interests

Ying Zhang

University of Rhode Island

Programs

CAREERS

Roles

mentor, researcher/educator

Interests

Xiaoqin Huang

Rice University

Programs

ACCESS CSSN

Roles

mentor, research computing facilitator, research software engineer, cssn

xqhuang at Rice

Interests