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bioinformatics

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Users
Name Roles Skills Interests
Chris Hemme
researcher/educator
Ying Zhang
mentor
researcher/educator
Kenneth Acosta
student facilitator
Younes Shafter
student facilitator
Carrie Brown
mentor
steering committee
Vinayak Mathur
researcher/educator
Eren Ada
student facilitator
Emma Strand
student facilitator
Xiaoluo Jiao
student facilitator
Ifeoma Ugwuanyi
student facilitator
Hening Cui
student facilitator
Resources
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Projects
Project Title Project Institution Project Owner Tags Status
Metagenomic analysis to identify gene clusters associated with IgA production SUNY Upstate Medical University Joel Wilmore bioinformatics, biology, collaboration, genomics, python, r, research-computing, research-facilitation In Progress
Host-symbiont population genomics - analyzing the intraspecific variability of methanogenic archaeal endosymbionts of genus Methanocorpusculum hosted by a marine anaerobic ciliate Metopus sp. (Metopida) University of Rhode Island -- Bay Campus Gaurav Khanna bioinformatics, biology, cluster, genomics In Progress
High throughput Python pipeline to identify Horizontal Gene Transfer Cabrini University Vinayak Mathur bioinformatics, biology, data-wrangling, genomics, github, python, workflow In Progress
Deep convolutional neural networks (dCNN) for image segmentation, instance labeling, and tracking. University of Delaware Anita Schwartz bash, bioinformatics, computational-chemistry, debugging, domain-specific, hpc, machine-learning, programming, programming-languages, python, researcher-facing, scripting, slurm, software-installation, tensorflow, visualization Complete
Parallel analysis of variants in multiple bear genomes: algorithmic solutions Rutgers University–Camden Galen Collier Data-Facing, bioinformatics, domain-specific, researcher-facing Complete
Assembly and Taxonomic Profiling of Metagenomic Sequences using Deep Learning University of Rhode Island Gaurav Khanna ai, bioinformatics, biology, deep-learning, domain-specific, gpus, hardware, machine-learning, neural-networks, python Complete
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