bioinformatics

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Projects

Project Title	Project Institution	Project Owner	Tags	Status
Deep convolutional neural networks (dCNN) for image segmentation, instance labeling, and tracking.	University of Delaware	Anita Schwartz	bash, bioinformatics, computational-chemistry, debugging, domain-specific, hpc, machine-learning, programming, programming-languages-and-software-support, python, Researcher-facing, scripting, slurm, software-installation, tensorflow, visualization	In Progress
Parallel analysis of variants in multiple bear genomes: algorithmic solutions	Rutgers University–Camden	Galen Collier	Researcher-facing, domain-specific, bioinformatics, Data-Facing	In Progress
Assembly and Taxonomic Profiling of Metagenomic Sequences using Deep Learning	University of Rhode Island	Gaurav Khanna	AI, bioinformatics, biology, deep-learning, domain-specific, gpus, hardware, machine-learning, neural-network, python	In Progress
Parallel analysis of variants in multiple bear genomes: Visualization of complexity	Rutgers University–Camden	Galen Collier	Researcher-facing, domain-specific, bioinformatics, visualization	In Progress

Student Facilitators

Name	Skills	Interests
Kenneth Acosta	bash bioinformatics biology conda genomics github pip python more...	batch-jobs cloud cloud/vm cluster cluster-management cluster-support data-management data-transfer more...
Girish Ganesan	AI bash bioinformatics c++ computational-chemistry conda deep-learning file-transfer more...	aws azure bash batch-jobs big-data cuda distributed-computing job-sizing more...

Mentors and Regional Facilitators

Name	Region	Skills	Interests
Brett Milash	RMACC	bioinformatics hpc python
Larry Feinstein	Northeast	bioinformatics simulations
Ying Zhang	CAREERS	bioinformatics hpc	bioinformatics deep-learning hpc
Jacob Pessin	Northeast	aws bash batch-jobs big-data bioinformatics cloud-storage (s-facing) cloud/vm cluster-support more...
Juan Vanegas	Northeast	bash batch-jobs bioinformatics compiling conda environment-modules hpc hpc-cluster-build more...
Rob Harbert	Northeast	anaconda array-job batch-jobs big-data bioinformatics biology cluster distributed-computing more...
Diana Dugas	RMACC, SWEETER	bioinformatics biology cyberinfrastructure genomics hpc-getting-started proposal-development research-computing research-facilitation more...

Researchers and Educators

Name	Skills	Interests
Chris Hemme	big-data bioinformatics r
Ying Zhang	bioinformatics hpc	bioinformatics deep-learning hpc

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