bash

Resources

Title	Category	Tags	Skill Level
Linux Tutorial	Learning	bash, filesystem, unix environment	Beginner
Linux Tutorial	Learning	bash, filesystem, unix environment	Beginner

Projects

Project Title	Project Institution	Project Owner	Tags	Status
Deep convolutional neural networks (dCNN) for image segmentation, instance labeling, and tracking.	University of Delaware	Anita Schwartz	Researcher-facing, DomainSpecific, BioInformatics, computational chemistry, Machine-Learning, visualization, Programming Languages and Software Support, scripting, programming, python, bash, HPC, slurm, SoftwareInstallation, tensorflow, debugging	New and Recruiting
End-to-end learning of protein-protein interactions	Rutgers University–Camden	Galen Collier	Researcher-facing, DomainSpecific, BioInformatics, computational chemistry, Machine-Learning, visualization, Programming Languages and Software Support, programming best practices, scripting, programming, python, bash, HPC, slurm, SoftwareInstallation, tensorflow, tuning, debugging	New and Recruiting
Optimization of Mouse Social Behavior Data Analyses Pipeline	University of Delaware	Anita Schwartz	batch jobs, job sizing, scheduling, matlab, environment-modules, bash, unix environment, lustre, nfs, slurm, sge, putty, x11, ssh	New and Recruiting
Electrostatics of the GABA(A) receptor pore	Rutgers University–Camden	Galen Collier	Researcher-facing, DomainSpecific, Molecular-Dynamics, namd, Programming Languages and Software Support, programming best practices, scripting, programming, bash, slurm	New and Recruiting

Student Facilitators

Name	Skills	Interests
Alex Flosdorf	bash c++ programming programming best practices Programming Languages and Software Support python
Matthew Smalley	bash c++ containers CyberSecurity filesystem gce networking programming python scripting ssh unix environment
Dylan Le	bash c++ Monte Carlo mpi programming programming best practices Programming Languages and Software Support python Simulations	AI big data Cloud - Commercial Cloud - Open source ClusterSupport CyberSecurity Deep-Learning HPC Machine-Learning mpi
Richard Le	bash c++ Compiling debugging parallelism pip programming best practices Programming Languages and Software Support python SoftwareInstallation	AI big data Deep-Learning ImageProcessing Machine-Learning NaturalLanguageProcessing
Igor Nachevnik	accounts acls archive azure backup bash batch jobs cifs Cloud - Commercial Compiling cpus CyberInfrastructure CyberSecurity data handling Data-facing desktops filesystem firewall graphics hardware architecture hw/sw integration internet networking nfs permissions professional development programming best practices putty rdp resources samba scheduling scripting security sftp smb ssh storage tcp terminal emulation/window management unix environment VideoProcessing visualization vpn vpn Workforce Development	aws azure big data Cloud/VM Compiling conda containers CyberInfrastructure Deep-Learning distributed computing Entrepreneurship HPC HPC Cluster build HPC Getting Started hpc operations linear programming Machine-Learning mathematica matlab metadata ondemand OS parallelism parallelization performance privacy python r rstudio-server s3 SoftwareInstallation spss stata tuning website Workforce Development x11
Kenneth Acosta	bash BioInformatics conda fastx pip python r scripting ssh unix environment vpn

Mentors and Regional Facilitators

Name	Region	Skills	Interests
Scott Valcourt	Northeast	accounts bash batch jobs big data Compiling CyberInfrastructure data handling data management data-lifecycle desktops distributed computing doi dtn firewall hardware HPC hpc operations HPCs internet metadata network networking open on-demand professional development programming programming best practices Programming Languages and Software Support provisioning Researcher-facing resources ScienceDMZ sdn security Site-Specific SoftwareInstallation spark Systems-facing tcp terminal emulation/window management Tools/Techniques unclassified unix environment website
Anita Schwartz	CAREERS	bash batch jobs ClusterSupport containers data management Data-facing distributed computing environment-modules file-transfer globus job sizing mathematica matlab mpi parallelism parallelization performance Programming Languages and Software Support putty Researcher-facing resources scheduling scripting sftp Site-Specific SoftwareInstallation ssh terminal emulation/window management Tools/Techniques vpn x11
Andy Monaghan	RMACC	bash batch jobs Compiling conda containers globus HPC Getting Started job sizing r resources scheduling scripting slurm unix environment
Kyle Hutson	Great Plains	bash batch jobs ceph CUI filesystem HPC Getting Started internet putty sftp ssh tcp Technical Training for HPC
Martin Cuma	RMACC	bash batch jobs c++ Compiling debugging distributed computing environment-modules job sizing matlab mpi mpi ondemand open on-demand parallelism parallelization performance programming programming best practices python r scheduling scripting	bash batch jobs c++ Compiling comsol conda containers cpus cuda debugging distributed computing environment-modules gpus hardware architecture job sizing matlab mpi ondemand open on-demand parallelism performance programming programming best practices python r rstudio-server scheduling scripting slurm SoftwareInstallation unix environment
Brian Haymore	RMACC	accounts acls backup bash batch jobs ceph cgroups cifs ClusterSupport Community Outreach Compiling cpus cuda dtn environment-modules file-transfer filesystem firewall gpus graphics hardware hardware architecture HPC HPC Cluster build HPC Getting Started hpc operations hw/sw integration ib internet lustre network networking nfs OS permissions provisioning putty s3 samba scheduler scheduling ScienceDMZ scripting sftp slurm smb SoftwareInstallation ssh Storage storage storage Systems-facing tcp Technical Training for HPC terminal emulation/window management unix environment x11	accounts acls archive aws azure backup bash batch jobs ceph cgroups cifs Cloud - Commercial Cloud - Open source Cloud/VM cloudlab ClusterSupport Community Outreach Compiling containers cpus data management Data-facing data-lifecycle distributed computing dtn environment-modules file-transfer filesystem firewall gce globus gpfs gpus graphics hardware hardware architecture HPC HPC Cluster build HPC Getting Started hpc operations hw/sw integration ib internet jetstream job sizing kubernetes lustre Management/Professional Development network networking nfs ondemand open on-demand openshift openstack OS osg parallelization performance permissions Platform privacy professional development Project Management provisioning putty Researcher-facing resources s3 samba scheduler scheduling ScienceDMZ scripting sdn sftp slurm smb SoftwareInstallation ssh Storage storage storage Systems-facing tcp Technical Training for HPC terminal emulation/window management unix environment visualization vpn vpn Workforce Development x11
Kaylea Nelson	CAREERS	Astrophysics bash batch jobs ClusterSupport Compiling conda debugging environment-modules file-transfer globus HPC HPC Getting Started job sizing mpi mpi parallelism performance programming programming best practices python Researcher-facing resources scheduling scripting sftp slurm SoftwareInstallation ssh unix environment x11	acls Astrophysics bash batch jobs c++ Compiling conda Data-facing debugging distributed computing environment-modules gpfs HPC Getting Started job sizing linear programming mpi mpi open on-demand parallelism performance programming best practices Programming Languages and Software Support python Researcher-facing resources scheduling scripting slurm storage
Bill Conn	Great Plains	bash batch jobs Compiling conda nfs slurm unix environment
Grant Scott	Great Plains	AI aws bash big data c++ Cloud/VM Compiling containers cpus cuda CUI CyberSecurity data handling data management debugging Deep-Learning distributed computing Entrepreneurship gce geographicinformationsystem gpus hardware hardware architecture HPC ImageProcessing jupyterhub Machine-Learning mpi mpi parallelism parallelization parallelization performance programming programming best practices Project Management putty python s3 scripting security ssh tensorflow terminal emulation/window management unix environment vectorization visualization Workforce Development	Cloud/VM Data-facing Management/Professional Development Researcher-facing
Carrie Brown	Great Plains	bash batch jobs conda condor containers data wrangling distributed computing fastx HPC Getting Started python r resources sas slurm
Jeffrey Nucciarone	CAREERS	archive bash big data ClusterSupport Community Outreach CyberSecurity data handling Deep-Learning filesystem gaussian HPC HPC Getting Started Machine-Learning matlab mpi open on-demand professional development programming best practices Technical Training for HPC
Keri Toksu	Northeast	bash batch jobs HPC Getting Started NaturalLanguageProcessing open on-demand programming Programming Languages and Software Support python resources scheduling slurm Technical Training for HPC website
Gaurav Khanna	CAREERS, Northeast	Astrophysics bash batch jobs c++ Cloud/VM ClusterSupport Compiling cpus cuda dependencies distributed computing DomainSpecific gpus hardware hardware architecture HPC HPC Cluster build HPC Getting Started hpc operations hw/sw integration Industrial Relations Management jupyterhub Management/Professional Development mathematica matlab MGHPCC mpi mpi OS parallelism parallelization parallelization performance professional development programming Project Management Proposal Development Quantum-Mechanics Researcher-facing resources scheduling sftp Simulations SoftwareInstallation ssh Systems-facing Tools/Techniques unix environment vectorization vpn Workforce Development
James Deaton	Great Plains	archive bash cgroups Community Outreach conda containers CyberInfrastructure data wrangling internet jupyterhub Management/Professional Development networking osg pip Proposal Development python r Researcher-facing rstudio-server s3 ScienceDMZ scripting security ssh storage storage Systems-facing Workforce Development

Researchers and Educators

Name	Skills	Interests
Gaurav Khanna	Astrophysics bash batch jobs c++ Cloud/VM ClusterSupport Compiling cpus cuda dependencies distributed computing DomainSpecific gpus hardware hardware architecture HPC HPC Cluster build HPC Getting Started hpc operations hw/sw integration Industrial Relations Management jupyterhub Management/Professional Development mathematica matlab MGHPCC mpi mpi OS parallelism parallelization parallelization performance professional development programming Project Management Proposal Development Quantum-Mechanics Researcher-facing resources scheduling sftp Simulations SoftwareInstallation ssh Systems-facing Tools/Techniques unix environment vectorization vpn Workforce Development

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