bash

Resources

Title	Category	Tags	Skill Level
Linux Tutorial	Learning	bash, file-system, unix-environment	Beginner
Linux Tutorial	Learning	bash, file-system, unix-environment	Beginner

Projects

Project Title	Project Institution	Project Owner	Tags	Status
Deep convolutional neural networks (dCNN) for image segmentation, instance labeling, and tracking.	University of Delaware	Anita Schwartz	Researcher-facing, Domain-Specific, bioinformatics, computational-chemistry, machine-learning, visualization, Programming-languages-and-software-support, scripting, programming, python, bash, HPC, slurm, Software-installation, tensorflow, debugging	In Progress
End-to-end learning of protein-protein interactions	Rutgers University–Camden	Galen Collier	Researcher-facing, Domain-Specific, bioinformatics, computational-chemistry, machine-learning, visualization, Programming-languages-and-software-support, programming-best-practices, scripting, programming, python, bash, HPC, slurm, Software-installation, tensorflow, tuning, debugging	In Progress
Optimization of Mouse Social Behavior Data Analyses Pipeline	University of Delaware	Anita Schwartz	batch-jobs, job-sizing, scheduling, matlab, environment-modules, bash, unix-environment, lustre, nfs, slurm, sge, putty, x11, ssh	In Progress
Electrostatics of the GABA(A) receptor pore	Rutgers University–Camden	Galen Collier	Researcher-facing, Domain-Specific, molecular-dynamics, namd, Programming-languages-and-software-support, programming-best-practices, scripting, programming, bash, slurm	In Progress

Student Facilitators

Name	Skills	Interests
Alex Flosdorf	bash c++ programming programming-best-practices Programming-languages-and-software-support python
Matthew Smalley	bash c++ containers cybersecurity file-system gce networking programming more...
Dylan Le	bash c++ monte-carlo mpi programming programming-best-practices Programming-languages-and-software-support python more...	AI big-data cloud-commercial cloud-open-source Cluster-support cybersecurity deep-learning HPC more...
Richard Le	bash c++ compiling debugging parallelism pip programming-best-practices Programming-languages-and-software-support more...	AI big-data deep-learning image-processing machine-learning natural-language-processing
Divya Dubey	bash ondemand r Software-installation ssh
Igor Nachevnik	accounts acls archive azure backup bash batch-jobs cifs more...	aws azure big-data Cloud/vm compiling conda containers cyberinfrastructure more...
Kenneth Acosta	bash bioinformatics biology conda genomics github pip python more...	batch-jobs cloud Cloud/vm cluster cluster-management Cluster-support Data-Management data-transfer more...
Girish Ganesan	AI bash bioinformatics c++ computational-chemistry conda deep-learning file-transfer more...	aws azure bash batch-jobs big-data cuda distributed-computing job-sizing more...

Mentors and Regional Facilitators

Name	Region	Skills	Interests
Scott Valcourt	Northeast	accounts bash batch-jobs big-data compiling cyberinfrastructure data-handling data-lifecycle more...
Anita Schwartz	CAREERS	bash batch-jobs Cluster-support containers Data-facing Data-Management distributed-computing environment-modules more...
Andy Monaghan	RMACC	bash batch-jobs compiling conda containers globus hpc-getting-started job-sizing more...
Kyle Hutson	Great Plains	bash batch-jobs ceph CUI file-system hpc-getting-started internet putty more...
Martin Cuma	RMACC	bash batch-jobs c++ compiling debugging distributed-computing environment-modules job-sizing more...	bash batch-jobs c++ compiling comsol conda containers cpus more...
Brian Haymore	RMACC	accounts acls backup bash batch-jobs ceph cgroups cifs more...	accounts acls archive aws azure backup bash batch-jobs more...
Kaylea Nelson	CAREERS	astrophysics bash batch-jobs Cluster-support compiling conda debugging environment-modules more...	acls astrophysics bash batch-jobs c++ compiling conda Data-facing more...
Bill Conn	Great Plains	bash batch-jobs compiling conda nfs slurm unix-environment
Grant Scott	Great Plains	AI aws bash big-data c++ Cloud/vm compiling containers more...	Cloud/vm Data-facing Management/Professional Development Researcher-facing
Carrie Brown	Great Plains	bash batch-jobs conda condor containers data-wrangling distributed-computing fastx more...
Jeffrey Nucciarone	CAREERS	archive bash big-data Cluster-support Community-Outreach cybersecurity data-handling deep-learning more...
Keri Toksu	Northeast	bash batch-jobs hpc-getting-started natural-language-processing open-on-demand programming Programming-languages-and-software-support python more...
Gaurav Khanna	CAREERS, Northeast	astrophysics bash batch-jobs c++ Cloud/vm Cluster-support compiling cpus more...
James Deaton	Great Plains	archive bash cgroups Community-Outreach conda containers cyberinfrastructure data-wrangling more...
Jacob Pessin	Northeast	aws bash batch-jobs big-data bioinformatics Cloud/vm Cluster-support condor more...
Juan Vanegas	Northeast	bash batch-jobs bioinformatics compiling conda environment-modules HPC hpc-cluster-build more...
Shaohao Chen	Northeast	AI bash batch-jobs compiling containers cuda debugging deep-learning more...
Wirawan Purwanto	Northeast	bash batch-jobs c++ mpi python scripting
Shawn Sivy	CAREERS	acls backup bash batch-jobs cifs compiling containers cpus more...

Researchers and Educators

Name	Skills	Interests
Gaurav Khanna	astrophysics bash batch-jobs c++ Cloud/vm Cluster-support compiling cpus more...

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