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Assembly and Taxonomic Profiling of Metagenomic Sequences using Deep Learning
biology ,
data ,
neural-network ,
Domain-Specific ,
AI ,
bioinformatics ,
deep-learning ,
machine-learning ,
python ,
Hardware ,
gpus
Physical chemistry studies of environmental pollutant transformations: MATLAB codes for morphological analysis of fractal soot aggregates
Physical chemistry studies of environmental pollutant transformations: LabVIEW codes for electrostatic collection and analysis of aerosol nanoparticles
Physical chemistry studies of environmental pollutant transformations: mass spectra analysis
Physical chemistry studies of environmental pollutant transformations: SIMION modeling of ion behavior in an electric field
Optimization of Mouse Social Behavior Data Analyses Pipeline
batch-jobs ,
job-sizing ,
scheduling ,
matlab ,
environment-modules ,
bash ,
unix-environment ,
lustre ,
nfs ,
slurm ,
sge ,
putty ,
x11 ,
ssh
Deep learning for biomedical image analysis
Model Mie scattering and light propagation through a high scattering medium using Monte Carlo simulation
Deep convolutional neural networks (dCNN) for image segmentation, instance labeling, and tracking.
Researcher-facing ,
Domain-Specific ,
bioinformatics ,
computational-chemistry ,
machine-learning ,
visualization ,
Programming-languages-and-software-support ,
scripting ,
programming ,
python ,
bash ,
HPC ,
slurm ,
Software-installation ,
tensorflow ,
debugging
Parallel analysis of variants in multiple bear genomes
Hybrid systems and LIFE methods for Mycobacterium tuberculosis
Analyzing NJ COVID-19 responses with Control theory, extending a study from earlier this year.
Electrostatics of the GABA(A) receptor pore
Amsterdam Modeling Suite Software Usage on Penn State’s Roar Computer Clusters
Researcher-facing ,
Domain-Specific ,
computational-chemistry ,
quantum-mechanics ,
hpc-getting-started ,
Tools-and-Techniques ,
batch-jobs ,
job-sizing ,
scheduling ,
terminal-emulation-and-window-management ,
Systems-facing ,
HPC-Operations ,
accounts ,
provisioning ,
permissions ,
hw-and-sw-integration ,
HPC ,
scheduler ,
pbs ,
Cluster-support ,
file-transfer ,
putty ,
ssh ,
Management/Professional Development ,
Technical-Training-for-HPC ,
Unclassified ,
cyberinfrastructure ,
HPCs
An optimized search algorithm for gravitational waves from post-merger remnants
Project WiCCED ML
Researcher-facing ,
Domain-Specific ,
machine-learning ,
docker ,
Programming-languages-and-software-support ,
programming-best-practices ,
python ,
r ,
Software-installation ,
tensorflow ,
tuning ,
spark ,
kubernetes ,
jupyterhub ,
hadoop
End-to-end learning of protein-protein interactions
Researcher-facing ,
Domain-Specific ,
bioinformatics ,
computational-chemistry ,
machine-learning ,
visualization ,
Programming-languages-and-software-support ,
programming-best-practices ,
scripting ,
programming ,
python ,
bash ,
HPC ,
slurm ,
Software-installation ,
tensorflow ,
tuning ,
debugging
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