r

Mentors and Regional Facilitators

Name	Region	Skills	Interests
Kevin Bryan	Campus Champions	bash c c++ cluster-management compiling debugging dependencies easybuild more...	archiving data-transfer deep-learning professional-development
Carrie Brown	Great Plains	bash batch-jobs conda containers data-wrangling distributed-computing fastx python more...
Carrie Brown	CAREERS	bioinformatics cleanup community-outreach data-wrangling distributed-computing genomics github github-pages more...
Beau Christ	Campus Champions	c r
Cody Stevens	Campus Champions	administering-hpc anaconda archiving aws backup bash batch-jobs benchmarking more...
David Oury	Northeast	programming programming-best-practices python r tensorflow unix-environment
Derek Strong	Campus Champions	bash batch-jobs containers data-management data-transfer github lmod modules more...
James Deaton	Campus Champions, Great Plains	archiving bash cgroups community-outreach conda containers data-wrangling hpc-storage more...
Jordan Hayes	Campus Champions	acls administering-hpc amber anaconda api atlas aws bash more...
Jacob Pessin	Northeast	aws bash batch-jobs big-data bioinformatics cloud-storage cluster-support cyverse more...
Jason Wells	Campus Champions	administering-hpc api bash batch-jobs biology cluster-management cluster-support computational-fluid-dynamics more...
Katia Bulekova	Northeast, Campus Champions	batch-jobs big-data c c++ cuda data-analysis data-wrangling fortran more...	optimization performance-tuning research-facilitation
shuai liu		ai anaconda azure big-data bioinformatics biology containers data-analysis more...
Martin Cuma	RMACC	bash batch-jobs c++ compiling debugging distributed-computing environment-modules job-sizing more...	bash batch-jobs c++ compiling comsol conda containers cuda more...
Andy Monaghan	RMACC, Campus Champions	bash batch-jobs compiling conda containers globus job-sizing r more...
Nick Dusek	Campus Champions	administering-hpc anaconda bash batch-jobs bioinformatics compiling containers data-transfer more...
Rob Harbert	Northeast	anaconda batch-jobs big-data bioinformatics biology distributed-computing genomics geographic-information-system more...
Mara Sedlins	RMACC	archiving data-lifecycle data-management doi metadata r spss
Gil Speyer	RMACC, Campus Champions	gpu matlab r	cuda
Swabir Silayi	Campus Champions	amber anaconda bash batch-jobs benchmarking c c++ checkpoint more...	administering-hpc cluster-management

Topics from Ask.CI

Affinity Groups

	Name	Description	Tags	Join
	R for HPC	People who use r on HPC systems and want to exchange experiences, best practices and/or collaborate.	r

Users

Name	Roles	Skills	Interests
Andrew Cheng	student facilitator	deep-learning image-processing programming python r slurm tensorflow
Ahamed Arafaat…	student facilitator	ai anaconda aws bash big-data data-analysis data-management data-management-software more...
Arvind Sai Che…	student facilitator	data-analysis machine-learning python r	stata
Carrie Brown	mentor	bioinformatics cleanup community-outreach data-wrangling distributed-computing genomics github github-pages more...
Carlos Paniagua	researcher/educator	cleanup data-analysis data-lifecycle data-wrangling file-formats git github image-processing more...
Divya Dubey	student facilitator	bash ondemand r software-installation ssh
Denis Kornev	researcher/educator	ai anaconda big-data data-analysis deep-learning machine-learning neural-networks python more...	big-data data-analysis pip python r rstudio-server scikit-learn
Eren Ada	student facilitator	anaconda bash big-data bioinformatics biology community-outreach compiling dependencies more...
cheng fang	student facilitator	ai anaconda batch-jobs conda data-analysis distributed-computing file-formats linear-programming more...
Yuanyuan Zeng	student facilitator	data-analysis data-management data-wrangling r sas sql	big-data data-analysis data-management data-wrangling metadata programming r sas more...
Gabrielle Martinez	student facilitator	api data-analysis github github-pages programming r stata	ai big-data data-reproducibility geographic-information-system image-processing julia machine-learning matlab more...
Hao Zheng	student facilitator	aws bash data-management git java project-management python pytorch more...
Chris Hemme	researcher/educator	anaconda big-data bioinformatics biology data-analysis genomics r	anaconda big-data bioinformatics biology data-analysis genomics python r
Hening Cui	student facilitator	bioinformatics biology cleanup data-analysis java machine-learning natural-language-processing neural-networks more...
Hyungil Kye	student facilitator	big-data c++ machine-learning monte-carlo python r sql	big-data machine-learning monte-carlo python r
Ifeoma Ugwuanyi	student facilitator	bioinformatics biology data-analysis genomics python r sql	anaconda big-data bioinformatics biology data-analysis data-wrangling genomics python more...
Rui Feng Ye	student facilitator	benchmarking c++ data-analysis r sas training
Katie Salas	student facilitator	community-outreach data-analysis data-lifecycle data-wrangling python r sql workflow
Kenneth Acosta	student facilitator	bash bioinformatics biology conda genomics github pip python more...	batch-jobs cluster-management cluster-support data-management data-transfer distributed-computing programming-best-practices scheduling
Krutika Patel	student facilitator	ai anaconda bash github java putty python r more...
Xiaoluo Jiao	student facilitator	bioinformatics biology cleanup data-management data-reproducibility data-wrangling genomics git more...	python sql
Minxiu Shi	student facilitator	archiving big-data data-analysis data-management-software data-wrangling git python r more...
Nithila Arunkumar	student facilitator	c++ community-outreach gce matlab monte-carlo r vpn	c++ community-outreach gce matlab monte-carlo project-management python r more...
Parth Shah	student facilitator	anaconda big-data c c++ cybersecurity data-analysis debugging deep-learning more...
Qingdou Han	student facilitator	bash data-analysis data-reproducibility data-wrangling git github github-pages machine-learning more...
Richa Gautam	student facilitator	aws big-data compiling conda data-wrangling debugging machine-learning matlab more...	ai big-data data-management data-wrangling deep-learning linear-programming machine-learning matlab more...
Santhosh Alagi…	student facilitator	python r sftp sql
Stanley Nwoji	researcher/educator	anaconda aws azure big-data c c++ community-outreach conda more...	big-data community-outreach conda data-analysis deep-learning genomics image-processing julia more...
Shaswat Dharaiya	student facilitator	anaconda aws bash c conda data-lifecycle deep-learning file-transfer more...
Seth Rosen	student facilitator	bash big-data c compiling data-analysis debugging deep-learning encryption more...
Sydney Shearer	student facilitator	anaconda data-analysis data-wrangling java machine-learning professional-development programming project-management more...
Tejasvi Munge	student facilitator	anaconda data-analysis java jupyterhub matlab pip putty python more...	biology c data-analysis data-wrangling deep-learning image-processing java machine-learning more...
Xuejing Wang	student facilitator	arcgis finite-element-analysis git materials-science python r
Yuming Ding	student facilitator	data-analysis finite-element-analysis r	big-data data-analysis finite-element-analysis git github linear-programming machine-learning matlab more...
Zoe Reich	student facilitator	biology data-analysis r	bioinformatics community-outreach genomics professional-development project-management python research-facilitation research-grants

Resources

Title	Category	Tags	Skill Level
Cornell Virtual Workshop	Learning	performance-tuning, python, r, matlab, slurm, mpi, cuda, file-transfer, globus	Beginner, Intermediate, Advanced, Expert
HPC University	Learning	python, r, matlab, mpi, compiling, debugging, professional-development	Beginner, Intermediate, Advanced, Expert

Resources

Title	Category	Tags	Skill Level
Cornell Virtual Workshop	Learning	performance-tuning, python, r, matlab, slurm, mpi, cuda, file-transfer, globus	Beginner, Intermediate, Advanced, Expert
HPC University	Learning	python, r, matlab, mpi, compiling, debugging, professional-development	Beginner, Intermediate, Advanced, Expert

Projects

Project Title	Project Institution	Project Owner	Tags	Status
Metagenomic analysis to identify gene clusters associated with IgA production	SUNY Upstate Medical University	Joel Wilmore	bioinformatics, biology, genomics, python, r, research-facilitation	In Progress
Simulating 21st century boreal forests and fire with a state-of-the-art process-based model	Cary Institute	Winslow Hansen	biology, cluster-support, dependencies, deployment, netcdf, performance-tuning, r	In Progress
Project WiCCED ML	University of Delaware	Anita Schwartz	docker, hadoop, jupyterhub, kubernetes, machine-learning, programming-best-practices, python, r, software-installation, spark, tensorflow, tuning	Complete

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