r

Mentors and Regional Facilitators

Name	Region	Skills	Interests
Ami Gaspar	Campus Champions, Northeast	archiving backup cloud-computing community-outreach data-access-protocols data-compliance data-lifecycle data-management more...
Andrew Monaghan	ACCESS CSSN	bash batch-jobs centos conda containers data-transfer docker git more...	anaconda bash conda containers docker git openstack scripting more...
Alyssa Pivirotto	ACCESS CSSN, Campus Champions	bash bioinformatics biology conda data-analysis data-science genomics github more...	arcgis machine-learning
Kevin Bryan	Campus Champions	acls bash c c++ cluster-management compiling conda debugging more...	archiving data-transfer deep-learning professional-development
Carrie Brown	CAREERS, ACCESS CSSN, CCMNet	bioinformatics cleanup community-outreach data-wrangling distributed-computing genomics github github-pages more...
Craig Gross	Campus Champions, CCMNet	bash c c++ conda data-analysis data-science git github more...
Beau Christ	Campus Champions	c r
Cody Stevens	Campus Champions, CCMNet	administering-hpc anaconda archiving aws backup bash batch-jobs benchmarking more...
David Oury	Northeast	programming programming-best-practices python r tensorflow unix-environment
Bala Desinghu	ACCESS CSSN, Campus Champions, CAREERS, Northeast	ai anaconda api bash batch-jobs benchmarking big-data bioinformatics more...	affinity-group ai allocations-proposal amber anaconda archiving backup bash more...
David Carlson	ACCESS CSSN	bash bioinformatics biology gatk genomics ookami python r more...
Daniel Morales	Campus Champions	access access-allocations ACCESS-credits adding-users allocation-management anaconda bash batch-jobs more...	access access-allocations allocation-management bioinformatics biology community-outreach conda deep-learning more...
Deborah Penchoff	Campus Champions	abstract access access-account adding-users affiliations ai allocation-management allocation-time more...
Derek Strong	Campus Champions	bash batch-jobs containers data-management data-transfer github lmod modules more...
Elie Alhajjar	ACCESS CSSN, CCMNet	biology c++ community-outreach data-science julia mathematica matlab professional-development more...	ai big-data biology c++ community-outreach data-analysis data-science deep-learning more...
Feseha Abebe-Akele	CCMNet	abstract access access-account access-allocations ACCESS-credits ACCESS-website account adding-users more...
Gil Speyer	ACCESS CSSN, RMACC, Campus Champions	bash bioinformatics c computational-chemistry conda cuda debugging fortran more...	bash c computational-chemistry cuda gpu matlab mpi nvidia more...
James Deaton	ACCESS CSSN, Campus Champions, Great Plains	archiving bash cgroups community-outreach conda containers data-wrangling hpc-storage more...
Juan Jose Garc…	ACCESS CSSN, Campus Champions	bash c++ git github r software-carpentry tmux version-control	ACCESS-website cuda generative-ai nlp
Juanjo Garcia Mesa	CCMNet, Campus Champions	access-allocations bash batch-jobs bioinformatics c++ git jetstream job-array more...	generative-ai job-accounting LLM mpi NAIRR pilot natural-language-processing openmpi programming-best-practices more...
Jordan Hayes	Campus Champions	acls administering-hpc amber anaconda api atlas aws bash more...
Jacob Pessin	Northeast	aws bash batch-jobs big-data bioinformatics cloud-storage cluster-support cyverse more...
Jason Wells	ACCESS CSSN, Campus Champions	administering-hpc api bash batch-jobs biology cluster-management cluster-support comsol more...
Katia Bulekova	ACCESS CSSN, Campus Champions, CAREERS, Northeast, CCMNet	batch-jobs benchmarking big-data c c++ cuda data-analysis data-wrangling more...	batch-jobs benchmarking big-data c cloud-computing cuda data-analysis gcc more...
Kenneth Bundy	CAREERS	anaconda aws azure bash batch-jobs c c++ cloud-commercial more...
shuai liu	ACCESS CSSN	ai anaconda azure big-data bioinformatics biology containers data-analysis more...
Mohsen Ahmadkhani	CCMNet, ACCESS CSSN	ai bash batch-jobs big-data centos computer-vision conda containers more...	access administering-hpc ai allocation-management api arcgis aws azure more...
Martin Cuma	RMACC, Campus Champions	bash batch-jobs c++ compiling debugging distributed-computing environment-modules job-sizing more...	bash batch-jobs c++ compiling comsol conda containers cuda more...
Mattie Niznik	Campus Champions	anaconda bash batch-jobs cluster-support compiling conda data-science docker more...	data-analysis data-science generative-ai git github github-pages html LLM more...
Andrew Monaghan	RMACC, Campus Champions	bash batch-jobs compiling conda containers globus job-sizing r more...
Michael Puerrer	Campus Champions, Northeast	astrophysics bash benchmarking c c++ conda containers cuda more...
Nick Dusek	Campus Champions	administering-hpc anaconda bash batch-jobs bioinformatics compiling containers data-transfer more...
Nicholas Panchy	Campus Champions	bash bioinformatics biology conda easybuild genomics modules open-ondemand more...
Rebecca Belshe	Campus Champions, CCMNet	abstract access access-account access-allocations ACCESS-credits ACCESS-website affiliations affinity-group more...	astrophysics biology data-science genomics materials-science oceanography psychology
Rob Harbert	Northeast	anaconda batch-jobs big-data bioinformatics biology distributed-computing genomics gis more...
Mara Sedlins	RMACC	archiving data-lifecycle data-management doi metadata r spss
Swabir Silayi	ACCESS CSSN, CCMNet, Campus Champions	amber anaconda bash batch-jobs benchmarking c c++ checkpoint more...	administering-hpc cluster-management
Xiaoge Wang	Campus Champions	bash batch-jobs benchmarking c c++ centos checkpoint compiling more...
William Lai	ACCESS CSSN	administering-hpc ai anaconda archiving backup bash bioinformatics biology more...	administering-hpc ai archiving bash benchmarking big-data bioinformatics biology more...
Yun Shen	CAREERS, Northeast, ACCESS CSSN, CCMNet	big-data bioinformatics data-analysis data-science genomics open-ondemand programming Programming more...

Users

Name	Roles	Skills	Interests
Andrew Cheng	student facilitator	deep-learning image-processing programming python r slurm tensorflow
Ahamed Arafaat…	student facilitator	ai anaconda aws bash big-data data-analysis data-management data-management-software more...
Arvind Sai Che…	student facilitator	data-analysis machine-learning python r	stata
Carrie Brown	mentor steering committee	bioinformatics cleanup community-outreach data-wrangling distributed-computing genomics github github-pages more...
Carlos Paniagua	researcher/educator	cleanup data-analysis data-lifecycle data-wrangling file-formats git github image-processing more...
Bala Desinghu	mentor researcher/educator rcf	ai anaconda api bash batch-jobs benchmarking big-data bioinformatics more...	affinity-group ai allocations-proposal amber anaconda archiving backup bash more...
Divya Dubey	student facilitator	bash open-ondemand r software-installation ssh
Denis Kornev	researcher/educator	ai anaconda big-data data-analysis deep-learning machine-learning neural-networks python more...	big-data data-analysis pip python r rstudio-server scikit-learn
Eren Ada	student facilitator	anaconda bash big-data bioinformatics biology community-outreach compiling dependencies more...
cheng fang	student facilitator	ai anaconda batch-jobs conda data-analysis distributed-computing file-formats linear-programming more...
Yuanyuan Zeng	student facilitator	data-analysis data-management data-wrangling r sas sql	big-data data-analysis data-management data-wrangling metadata programming r sas more...
Gabrielle Martinez	student facilitator	api data-analysis data-reproducibility data-science gis github github-pages programming more...	ai big-data data-reproducibility gis image-processing julia machine-learning matlab more...
Hao Zheng	student facilitator	aws bash data-management git java project-management python pytorch more...
Chris Hemme	researcher/educator	anaconda big-data bioinformatics biology data-analysis genomics r	anaconda big-data bioinformatics biology data-analysis genomics python r
Hening Cui	student facilitator	bioinformatics biology cleanup data-analysis java machine-learning natural-language-processing neural-networks more...
Hyungil Kye	student facilitator	big-data c++ machine-learning monte-carlo python r sql	big-data machine-learning monte-carlo python r
Ifeoma Ugwuanyi	student facilitator	bioinformatics biology data-analysis genomics python r sql	anaconda big-data bioinformatics biology data-analysis data-wrangling genomics python more...
Rui Feng Ye	student facilitator	benchmarking c++ data-analysis r sas training
Kenneth Acosta	student facilitator	bash bioinformatics biology conda genomics github pip python more...	batch-jobs cluster-management cluster-support data-management data-transfer distributed-computing programming-best-practices scheduling
Katia Bulekova	mentor rcf	batch-jobs benchmarking big-data c c++ cuda data-analysis data-wrangling more...	batch-jobs benchmarking big-data c cloud-computing cuda data-analysis gcc more...
Katie Salas	student facilitator	community-outreach data-analysis data-lifecycle data-wrangling python r sql workflow
Kenneth Bundy	mentor	anaconda aws azure bash batch-jobs c c++ cloud-commercial more...
Krutika Patel	student facilitator	ai anaconda bash github java putty python r more...
Lenore Martin	researcher/educator	administering-hpc amber anaconda backup bash bioinformatics biology charmm more...	administering-hpc ai amber anaconda bioinformatics biology charmm community-outreach more...
Xiaoluo Jiao	student facilitator	bioinformatics biology cleanup data-management data-reproducibility data-wrangling genomics git more...	python sql
Minxiu Shi	student facilitator	archiving big-data data-analysis data-management-software data-wrangling git python r more...
Nithila Arunkumar	student facilitator	c++ community-outreach gce matlab monte-carlo r vpn	c++ community-outreach gce matlab monte-carlo project-management python r more...
Parth Shah	student facilitator	anaconda big-data c c++ cybersecurity data-analysis debugging deep-learning more...
Qingdou Han	student facilitator	bash data-analysis data-reproducibility data-wrangling git github github-pages machine-learning more...
Richa Gautam	student facilitator	aws big-data compiling conda data-wrangling debugging machine-learning matlab more...	ai big-data data-management data-wrangling deep-learning linear-programming machine-learning matlab more...
Santhosh Alagi…	student facilitator	python r sftp sql
Stanley Nwoji	researcher/educator	anaconda aws azure big-data c c++ community-outreach conda more...	big-data community-outreach conda data-analysis deep-learning genomics image-processing julia more...
Seth Rosen	student facilitator	bash big-data c compiling data-analysis debugging deep-learning encryption more...
Sydney Shearer	student facilitator	anaconda data-analysis data-wrangling java machine-learning professional-development programming project-management more...
Ying-Chih Sun	student facilitator	ai archiving backup big-data data-analysis data-management data-sharing file-formats more...	ai big-data data-analysis data-management data-management-software linear-programming machine-learning mathematica more...
Tejasvi Munge	student facilitator	anaconda data-analysis java jupyterhub matlab pip putty python more...	biology c data-analysis data-wrangling deep-learning image-processing java machine-learning more...
William Feng	student facilitator	bioinformatics biology data-analysis genomics java programming programming-best-practices python more...
Xuejing Wang	student facilitator	arcgis finite-element-analysis git materials-science python r
Yun Shen	mentor	big-data bioinformatics data-analysis data-science genomics open-ondemand programming Programming more...
Yuming Ding	student facilitator	data-analysis finite-element-analysis r	big-data data-analysis finite-element-analysis git github linear-programming machine-learning matlab more...
Zoe Reich	student facilitator	biology data-analysis r	bioinformatics community-outreach genomics professional-development project-management python research-facilitation research-grants

Projects

Project Title	Project Institution	Project Owner	Tags	Status
Metagenomic analysis to identify gene clusters associated with IgA production	SUNY Upstate Medical University	Joel Wilmore	bioinformatics, biology, genomics, python, r, research-facilitation	Finishing Up
Simulating 21st century boreal forests and fire with a state-of-the-art process-based model	Cary Institute	Winslow Hansen	biology, cluster-support, dependencies, deployment, netcdf, performance-tuning, r	Finishing Up
Project WiCCED ML	University of Delaware	Anita Schwartz	docker, hadoop, jupyterhub, kubernetes, machine-learning, programming-best-practices, python, r, software-installation, spark, tensorflow, tuning	Complete

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	R for HPC	People who use r on HPC systems and want to exchange experiences, best practices and/or collaborate.	r	Login to join

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Knowledge Base Resources

Title	Category	Tags	Skill Level
Automated Machine Learning Book	Learning	ai, data-analysis, deep-learning, machine-learning, neural-networks, python, r	Intermediate, Advanced
Cornell Virtual Workshop	Learning	jetstream, stampede2, cloud-computing, data-analysis, performance-tuning, parallelization, file-transfer, globus, slurm, training, cuda, matlab, python, r, mpi	Beginner, Intermediate, Advanced
Data Analysis with R for Educators	Video	data-analysis, data-science, psychology, biology, training, workforce-development, r	Beginner