github

Mentors and Regional Facilitators

Name	Region	Skills	Interests
Carrie Brown	CAREERS, ACCESS CSSN	bioinformatics cleanup community-outreach data-wrangling distributed-computing genomics github github-pages more...
Cody Stevens	Campus Champions	administering-hpc anaconda archiving aws backup bash batch-jobs benchmarking more...
Balamurugan Desinghu	ACCESS CSSN, Campus Champions, CAREERS, Northeast	ai anaconda api bash batch-jobs benchmarking big-data bioinformatics more...	affinity-group ai allocations-proposal amber anaconda archiving backup bash more...
Derek Strong	Campus Champions	bash batch-jobs containers data-management data-transfer github lmod modules more...
Edwin Posada	Campus Champions	administering-hpc bash batch-jobs benchmarking c c++ cluster-management cluster-support more...
Fernando Garzon	ACCESS CSSN	abstract ai aws bash batch-jobs big-data citation containers more...	ai aws azure bash batch-jobs big-data c c++ more...
Georgia Stuart	TRECIS	c data-analysis github jekyll monte-carlo random-numbers
Craig Gross	Campus Champions	bash c c++ conda data-analysis data-science git github more...
Ibrahim Sheikh	CAREERS	benchmarking community-outreach debugging deep-learning dependencies encryption geographic-information-system git more...	backup benchmarking community-outreach computational-chemistry deep-learning file-formats gamess geographic-information-system more...
Yu-Chieh Chi	Campus Champions	anaconda bash batch-jobs c c++ computational-chemistry containers cuda more...
Jordan Hayes	Campus Champions	acls administering-hpc amber anaconda api atlas aws bash more...
Jason Wells	Campus Champions	administering-hpc api bash batch-jobs biology cluster-management cluster-support computational-fluid-dynamics more...
Jacob Fosso Tande	Campus Champions	administering-hpc azure bash c++ cluster-support community-outreach compiling computational-chemistry more...
Kali McLennan	Campus Champions, Great Plains	acls bash cgroups cifs cluster-management cluster-support compiling conda more...
shuai liu	ACCESS CSSN	ai anaconda azure big-data bioinformatics biology containers data-analysis more...
Michael Puerrer	Campus Champions, Northeast	astrophysics bash benchmarking c c++ conda containers cuda more...
Maryam Taeb		abstract ai anaconda bash big-data community-outreach conda cybersecurity more...	abstract ai anaconda api bash big-data c citation more...
Paul Rulis	Campus Champions	abstract affiliations ai bash batch-jobs c c++ checkpoint more...	abstract affiliations ai amber atlas bash batch-jobs benchmarking more...
Mike Renfro	Campus Champions	administering-hpc anaconda bash conda environment-modules fortran git github more...
Rob Harbert	Northeast	anaconda batch-jobs big-data bioinformatics biology distributed-computing genomics geographic-information-system more...
Ruben Lara	Campus Champions	administering-hpc backup bash cluster-management cluster-support cmmc cpu-architecture cui more...
Sean Anderson	Campus Champions	administering-hpc anaconda bash batch-jobs benchmarking cluster-support community-outreach compiling more...
Xiaoqin Huang	ACCESS CSSN	access-acount ACCESS-credits adding-users affinity-group allocations-extension allocations-proposal amber anaconda more...	ACCESS-credits ACCESS-website adding-users affinity-group allocations-extension allocations-proposal amber anaconda more...
Suhong Li	CAREERS, ACCESS CSSN	anaconda big-data cleanup data-analysis data-wrangling github machine-learning natural-language-processing more...
Soham Pal	Campus Champions	bash c++ conda file-formats git github github-pages jupyterhub more...
Sumit Saluja	Campus Champions	administering-hpc anaconda aws azure backup batch-jobs c c++ more...
Swabir Silayi	Campus Champions	amber anaconda bash batch-jobs benchmarking c c++ checkpoint more...	administering-hpc cluster-management
Tyler Burkett	Kentucky	aws bash c c++ containers cuda git github more...	networking quantum-mechanics
William Lai	ACCESS CSSN	administering-hpc ai anaconda archiving backup bash bioinformatics biology more...	administering-hpc ai archiving bash benchmarking big-data bioinformatics biology more...

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Affinity Groups

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Users

Name	Roles	Skills	Interests
Amogh Sarangdhar	student facilitator	anaconda c c++ data-science git github java python more...	ai data-science deep-learning linear-programming machine-learning
Carrie Brown	mentor steering committee	bioinformatics cleanup community-outreach data-wrangling distributed-computing genomics github github-pages more...
Joseph Antonucci	student facilitator	ai c c++ cleanup compiling cuda deep-learning git more...	ai astrophysics c c++ compiling cuda cybersecurity deep-learning more...
Carlos Paniagua	researcher/educator	cleanup data-analysis data-lifecycle data-wrangling file-formats git github image-processing more...
Balamurugan Desinghu	mentor rcf	ai anaconda api bash batch-jobs benchmarking big-data bioinformatics more...	affinity-group ai allocations-proposal amber anaconda archiving backup bash more...
Emma Strand	student facilitator	anaconda archiving bash big-data bioinformatics biology community-outreach data-analysis more...
Eren Ada	student facilitator	anaconda bash big-data bioinformatics biology community-outreach compiling dependencies more...
Gabrielle Martinez	student facilitator	api data-analysis github github-pages programming r stata	ai big-data data-reproducibility geographic-information-system image-processing julia machine-learning matlab more...
Gregory Ezike	student facilitator	bash biology c c++ github java mpi programming more...
Ibrahim Sheikh	student facilitator mentor regional facilitator researcher/educator rcf	benchmarking community-outreach debugging deep-learning dependencies encryption geographic-information-system git more...	backup benchmarking community-outreach computational-chemistry deep-learning file-formats gamess geographic-information-system more...
Iryna Chornopys	student facilitator	anaconda cleanup data-analysis github python sql xml
Jaini Bhavsar	student facilitator	anaconda bash conda github jupyterhub machine-learning python scripting more...
Jaivik Patel	student facilitator	bash c c++ compiling debugging git github java more...
John Acheampong	student facilitator	biology conda github programming-best-practices python software-installation
Kenneth Acosta	student facilitator	bash bioinformatics biology conda genomics github pip python more...	batch-jobs cluster-management cluster-support data-management data-transfer distributed-computing programming-best-practices scheduling
Krutika Patel	student facilitator	ai anaconda bash github java putty python r more...
Lenore Martin	researcher/educator	administering-hpc amber anaconda backup bash bioinformatics biology charmm more...	administering-hpc ai amber anaconda bioinformatics biology charmm community-outreach more...
Xiaoluo Jiao	student facilitator	bioinformatics biology cleanup data-management data-reproducibility data-wrangling genomics git more...	python sql
Madhukara Keku…	student facilitator	ai anaconda api aws bash big-data c conda more...
Nihar Biradar	student facilitator	api c++ cleanup git github java matlab memory more...	ai astrophysics aws batch-jobs cloud-open-source cloud-storage computational-fluid-dynamics cpu-architecture more...
Qingdou Han	student facilitator	bash data-analysis data-reproducibility data-wrangling git github github-pages machine-learning more...
Parameshwaran …	student facilitator	abaqus anaconda api batch-jobs comsol data-science deep-learning finite-element-analysis more...	abaqus bash batch-jobs big-data comsol data-science deep-learning environment-modules more...
Ritesh Bachhar	student facilitator	anaconda astrophysics c fortran git github machine-learning mathematica more...	api astrophysics bash batch-jobs c++ compiling cpu-architecture cuda more...
Sander Cohen-Janes	student facilitator	anaconda bash benchmarking dft gaussian github mathematica python more...	c git python r xsede
Suhong Li	mentor researcher/educator	anaconda big-data cleanup data-analysis data-wrangling github machine-learning natural-language-processing more...
Seth Rosen	student facilitator	bash big-data c compiling data-analysis debugging deep-learning encryption more...
Younes Shafter	student facilitator	anaconda big-data bioinformatics computational-chemistry ddocent deep-learning fastx gatk more...

CI Links

Title	Category	Tags	Skill Level
Awesome Jupyter Widgets (for building interactive scientific workflows or science gateway tools)	Learning	ai, computer-graphics, plotting, visualization, big-data, data-analysis, deep-learning, image-processing, machine-learning, monte-carlo, neural-networks, data-sharing, data-lifecycle, data-management, data-management-software, data-reproducibility, github, astrophysics, data-science, novel-accelerators, computational-chemistry, genomics, materials-science, gravitational-waves, oceanography, particle-physics, physiology, psychology, quantum-computing, quantum-mechanics, biology, ondemand, science gateway, c++, jupyterhub, python	Beginner, Intermediate, Advanced
Benchmarking with a cross-platform open-source flow solver, PyFR	Tool	finite-element-analysis, benchmarking, parallelization, github, computational-fluid-dynamics, openmpi, c++, cuda, mpi	Intermediate
Building the ArduPilot environment for Linux	Docs	setup, profiling, data-transfer, github, github-pages, cpu-architecture, bash, environment-modules, git, modules, os, permissions, ssh, vim	Beginner
Git Branching Workflow and Maneuvers	Learning	github, git	Beginner, Intermediate, Advanced
GPU Computing Workshop Series for the Earth Science Community	Learning	optimization, performance-tuning, profiling, parallelization, github, pytorch, tensorflow, oceanography, gpu, hpc-arch-and-perf, PROFESSIONAL and WORKFORCE DEVELOPMENT, technical-training-for-hpc, PROGRAMMING LANGUAGES FRAMEWORKS AND IDEs, c, c++, fortran, cuda, jupyterhub, programming, programming-best-practices, python	Beginner
Guide to building AirSim on Linux machines	Docs	documentation, setup, github, github-pages, hardware, unix-environment	Beginner, Intermediate
How the Little Jupyter Notebook Became a Web App: Managing Increasing Complexity with nbdev	Learning	data-sharing, data-management-software, data-reproducibility, github, workflow, astrophysics, data-science, novel-accelerators, computational-chemistry, genomics, materials-science, gravitational-waves, oceanography, particle-physics, physiology, psychology, quantum-computing, quantum-mechanics, biology, science gateway, software-carpentry, jupyterhub, programming, python	Beginner, Intermediate, Advanced
Running Particle-in-Cell Simulations on HPC	Docs	github, github-pages, novel-accelerators	Intermediate
Science Gateway Tool/Web App Template (Jupyter Notebook + ipywidgets)	Learning	data-analysis, github, astrophysics, data-science, novel-accelerators, computational-chemistry, genomics, materials-science, gravitational-waves, oceanography, particle-physics, physiology, psychology, quantum-computing, quantum-mechanics, biology, ondemand, science gateway, jupyterhub, python	Beginner
Version control with Git	Learning	version-control, github, git	Beginner

Projects

Project Title	Project Institution	Project Owner	Tags	Status
High throughput Python pipeline to identify Horizontal Gene Transfer	Cabrini University	Vinayak Mathur	bioinformatics, biology, data-wrangling, genomics, github, python, workflow	Halted
Calculation of Polymer Hydrophobicity	Penn State-New Kensington	Rob Mathers	cleanup, git, github, optimization, python	Complete
High Performance Computing vs Quantum Computing for Neural Networks supporting Artificial Intelligence	Pace University	Avery Leider	ai, big-data, deep-learning, github, hpc-cluster-architecture, hpc-operations, jupyterhub, machine-learning, natural-language-processing, proposal-development, python, quantum-mechanics, research-facilitation, research-grants, resources, scikit-learn, singularity, technical-training-for-hpc, vectorization	Complete

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