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Projects/Engagements

Project Title Project Institution Project Owner Tags Status Project Leader
Deep convolutional neural networks (dCNN) for image segmentation, instance labeling, and tracking. University of Delaware Anita Schwartz bash, bioinformatics, computational-chemistry, debugging, domain-specific, hpc, machine-learning, programming, programming-languages-and-software-support, python, Researcher-facing, scripting, slurm, software-installation, tensorflow, visualization In Progress Jeffrey Caplan
Model Mie scattering and light propagation through a high scattering medium using Monte Carlo simulation Southern Connecticut State University Binlin Wu data-handling, simulations, monte-carlo, scheduling, programming, matlab In Progress Binlin Wu
Deep learning for biomedical image analysis Southern Connecticut State University Binlin Wu big-data, AI, deep-learning, machine-learning, python, matlab, gpus, tensorflow In Progress Binlin Wu
Optimization of Mouse Social Behavior Data Analyses Pipeline University of Delaware Anita Schwartz bash, batch-jobs, environment-modules, job-sizing, lustre, matlab, nfs, putty, scheduling, sge, slurm, ssh, unix-environment, x11 In Progress Josh Neunuebel
Physical chemistry studies of environmental pollutant transformations: SIMION modeling of ion behavior in an electric field New Jersey Institute of Technology Galen Collier Researcher-facing, domain-specific, computational-chemistry, particle-physics, scripting, programming Recruiting Alexei Khalizov
Physical chemistry studies of environmental pollutant transformations: mass spectra analysis New Jersey Institute of Technology Galen Collier Researcher-facing, domain-specific, computational-chemistry, particle-physics, scripting, programming, matlab Recruiting Alexei Khalizov
Physical chemistry studies of environmental pollutant transformations: LabVIEW codes for electrostatic collection and analysis of aerosol nanoparticles New Jersey Institute of Technology Galen Collier Researcher-facing, domain-specific, computational-chemistry, particle-physics, scripting, programming Recruiting Alexei Khalizov
Physical chemistry studies of environmental pollutant transformations: MATLAB codes for morphological analysis of fractal soot aggregates New Jersey Institute of Technology Galen Collier Researcher-facing, domain-specific, computational-chemistry, particle-physics, scripting, programming, matlab Recruiting Alexei Khalizov
Parallel analysis of variants in multiple bear genomes: algorithmic solutions Rutgers University–Camden Galen Collier Researcher-facing, domain-specific, bioinformatics, Data-Facing In Progress Andrey Grigoriev
Hybrid systems and LIFE methods for Mycobacterium tuberculosis Rutgers-Camden Sean McQuade matlab In Progress Benedetto Piccoli
Analyzing NJ COVID-19 responses with Control theory, extending a study from earlier this year. Rutgers-Camden Sean McQuade Data-facing, matlab, programming, programming-best-practices, programming-languages-and-software-support, Researcher-facing, simulations, tools-and-techniques In Progress Benedetto Piccoli
Electrostatics of the GABA(A) receptor pore Rutgers University–Camden Galen Collier bash, domain-specific, molecular-dynamics, namd, programming, programming-best-practices, programming-languages-and-software-support, Researcher-facing, scripting, slurm In Progress Grace Brannigan
Amsterdam Modeling Suite Software Usage on Penn State’s Roar Computer Clusters Penn State University - Altoona Campus Jeffrey Nucciarone account, batch-jobs, cluster-support, computational-chemistry, cyberinfrastructure, domain-specific, file-transfer, hpc, hpc-getting-started, hpc-operations, hw-and-sw-integration, job-sizing, Management/Professional Development, pbs, permissions, provisioning, putty, quantum-mechanics, Researcher-facing, scheduler, scheduling, ssh, Systems-facing, technical-training-for-hpc, terminal-emulation-and-window-management, tools-and-techniques, Unclassified In Progress Kofi Adu
An optimized search algorithm for gravitational waves from post-merger remnants University of Rhode Island Gaurav Khanna astrophysics, conda, cuda, gpus, hpc, hpc-getting-started, parallelism, parallelization, python In Progress Robert Coyne
Project WiCCED ML University of Delaware Anita Schwartz Researcher-facing, domain-specific, machine-learning, docker, programming-languages-and-software-support, programming-best-practices, python, r, software-installation, tensorflow, tuning, spark, kubernetes, jupyterhub, hadoop In Progress Tina Callahan
Assembly and Taxonomic Profiling of Metagenomic Sequences using Deep Learning University of Rhode Island Gaurav Khanna AI, bioinformatics, biology, deep-learning, domain-specific, gpus, hardware, machine-learning, neural-network, python In Progress Ying Zhang
Computational Simulation of One-Dimensional Porous Polymers The University at Albany, SUNY Jeremy Feldblyum collaboration, computational-chemistry, materials-science, monte-carlo In Progress Jeremy Feldblyum
Parallel analysis of variants in multiple bear genomes: Visualization of complexity Rutgers University–Camden Galen Collier Researcher-facing, domain-specific, bioinformatics, visualization In Progress Andrey Grigoriev
Establish Computational Analysis Infrastructure for the CCRI 16-inch Telescope. Community College of Rhode Island Gaurav Khanna astrophysics, cyberinfrastructure, data-analysis, documentation, git, hpc, python, remote-servers, research-facilitation, scripting In Progress Brendan Britton
A green, open-source greater than 10B parameter language model. MIT Chris Hill Recruiting Chris Hill