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Projects

Project Title Project Institution Project Owner Tags Status Project Leader
Molecular identification of forensically relevant entomological taxa using on-site MinION sequencer Kean University Galen Collier hardware Recruiting Denise Gemmellaro
Delaware Microbiome Mapping and Database Development University of Delaware Christina Callahan On Hold Christina Callahan
Computational Simulation of One-Dimensional Porous Polymers The University at Albany, SUNY Jeremy Feldblyum computational-chemistry, materials-science, monte-carlo In Progress Jeremy Feldblyum
Metagenomic analysis to identify gene clusters associated with IgA production SUNY Upstate Medical University Joel Wilmore bioinformatics, biology, genomics, python, r, research-facilitation In Progress Joel Wilmore
Simulating 21st century boreal forests and fire with a state-of-the-art process-based model Cary Institute Winslow Hansen biology, cluster-support, dependencies, deployment, netcdf, performance-tuning, r In Progress Winslow Hansen
Calculation of Polymer Hydrophobicity Penn State-New Kensington Rob Mathers cleanup, git, github, optimization, python In Progress Rob Mathers
Developing subject-specific models for the study of traumatic brain injury Robert Morris University Rika Carlsen finite-element-analysis, image-processing, matlab, programming, unix-environment, workflow In Progress Rika Carlsen
Investigating the Association between Environmental Characteristics and Psychological Well-Being Kean University Galen Collier ai, api, data-analysis, geographic-information-system, image-processing, machine-learning, programming, programming-best-practices, python In Progress Feng Qi
Deep-learning facilitated microscopy for the dissection of durable resistance to plant disease. University of Delaware Anita Schwartz deep-learning, python In Progress Jeffrey Caplan
High throughput Python pipeline to identify Horizontal Gene Transfer Cabrini University Vinayak Mathur bioinformatics, biology, data-wrangling, genomics, github, python, workflow In Progress Vinayak Mathur
Predictive Simulation of Pulsed Electric Field Exposure Effects on Vegetable Tissues and Bacterial Suspensions Rowan University Galen Collier In Progress Gary Thompson
Developing deep learning algorithms to analyze Raman spectral data for brain cancer diagnosis Southern CT State University Binlin Wu gpu, image-processing, machine-learning, neural-networks, python In Progress Binlin Wu
Medical Diagnostics of Chest X-Ray Images with Deep Convolutional Neural Networks (CNN) Kean University Bala Desinghu ai, big-data, gpu In Progress George Avirappattu
Performance Benchmarks and Optimizations of a Gravitational-Wave Simulation Software LIU Post steven liebling astrophysics, c++, matlab In Progress steven liebling
Detecting Covid-19 Misinformation on Social Media Bryant University Gaurav Khanna ai, bash, batch-jobs, big-data, biology, cuda In Progress Suhong Li
Expanding computational resources for gravitational wave detection pipelines in medium-latency and beyond University of Rhode Island Gaurav Khanna ANALYSES and ALGORITHMS, astrophysics, benchmarking, data-transfer, gravitational-waves, parallelization, python, scheduling In Progress Rob Coyne
Bias and Fairness in Machine Learning Ahmed Rashed In Progress Ahmed Rashed
Physical chemistry studies of environmental pollutant transformations: SIMION modeling of ion behavior in an electric field New Jersey Institute of Technology Galen Collier computational-chemistry, particle-physics, programming, scripting Halted Alexei Khalizov
Vector Representation with a Finance Corpus Rhode Island College Gaurav Khanna bash, batch-jobs, deep-learning, distributed-computing, machine-learning, programming, python, research-facilitation, ssh Finishing Up Murat Aydogdu
Deep convolutional neural networks (dCNN) for image segmentation, instance labeling, and tracking. University of Delaware Anita Schwartz bash, bioinformatics, computational-chemistry, debugging, machine-learning, programming, python, scripting, slurm, software-installation, tensorflow Complete Jeffrey Caplan
An optimized search algorithm for gravitational waves from post-merger remnants University of Rhode Island Gaurav Khanna astrophysics, conda, cuda, gpu, parallelization, python Complete Robert Coyne
High Performance Computing vs Quantum Computing for Neural Networks supporting Artificial Intelligence Pace University Avery Leider ai, big-data, deep-learning, github, hpc-cluster-architecture, hpc-operations, jupyterhub, machine-learning, natural-language-processing, proposal-development, python, quantum-mechanics, research-facilitation, research-grants, resources, scikit-learn, singularity, technical-training-for-hpc, vectorization Complete Jonathan Hill
Model Mie scattering and light propagation through a high scattering medium using Monte Carlo simulation Southern Connecticut State University Binlin Wu matlab, monte-carlo, programming, scheduling Complete Binlin Wu
Deep learning for biomedical image analysis Southern Connecticut State University Binlin Wu ai, big-data, deep-learning, gpu, machine-learning, matlab, python, tensorflow Complete Binlin Wu
Optimization of Mouse Social Behavior Data Analyses Pipeline University of Delaware Anita Schwartz bash, batch-jobs, environment-modules, job-sizing, lustre, matlab, nfs, putty, scheduling, sge, slurm, ssh, unix-environment, x11 Complete Josh Neunuebel
Electrostatics of the GABA(A) receptor pore Rutgers University–Camden Galen Collier bash, molecular-dynamics, namd, programming, programming-best-practices, scripting, slurm Complete Grace Brannigan
Parallel analysis of variants in multiple bear genomes: algorithmic solutions Rutgers University–Camden Galen Collier Data-Facing, bioinformatics Complete Andrey Grigoriev
Hybrid systems and LIFE methods for Mycobacterium tuberculosis Rutgers-Camden Sean McQuade matlab Complete Benedetto Piccoli
Analyzing NJ COVID-19 responses with Control theory, extending a study from earlier this year. Rutgers-Camden Sean McQuade matlab, programming, programming-best-practices Complete Benedetto Piccoli
Amsterdam Modeling Suite Software Usage on Penn State’s Roar Computer Clusters Penn State University - Altoona Campus Jeffrey J. Nucciarone batch-jobs, cluster-support, computational-chemistry, file-transfer, hpc-operations, job-sizing, management, pbs, permissions, provisioning, putty, quantum-mechanics, schedulers, scheduling, ssh, technical-training-for-hpc, terminal-emulation-and-window-management Complete Kofi Adu
Project WiCCED ML University of Delaware Anita Schwartz docker, hadoop, jupyterhub, kubernetes, machine-learning, programming-best-practices, python, r, software-installation, spark, tensorflow, tuning Complete Tina Callahan
Host-symbiont population genomics - analyzing the intraspecific variability of methanogenic archaeal endosymbionts of genus Methanocorpusculum hosted by a marine anaerobic ciliate Metopus sp. (Metopida) University of Rhode Island -- Bay Campus Gaurav Khanna bioinformatics, biology, genomics Complete Roxanne Beinart
Assembly and Taxonomic Profiling of Metagenomic Sequences using Deep Learning University of Rhode Island Gaurav Khanna ai, bioinformatics, biology, deep-learning, gpu, hardware, machine-learning, neural-networks, python Complete Ying Zhang
Establish Computational Analysis Infrastructure for the CCRI 16-inch Telescope. Community College of Rhode Island Gaurav Khanna astrophysics, data-analysis, git, python, research-facilitation, scripting Complete Brendan Britton
US Tax Code to Natural Language Parsable Data for Programming Languages University of Connecticut - Stamford Katherine Nelson natural-language-processing, python, sql Complete Phillip Bradford
Statistical Analysis of criminal cases in the United States District Court of Puerto Rico Salve Regina University Gaurav Khanna ai, data-analysis, machine-learning, python Complete Carlos Paniagua
Understanding Covid-19 Pandemic through Social Media Discussion Bryant University Gaurav Khanna ai, data-analysis, natural-language-processing, programming, programming-best-practices, python Complete Suhong Li
Coral Genomics: An assessment of metabolic pathways and genes influencing coral bleaching. Implications for the development of hydra as a model organism. Wilmington University Anita Schwartz genomics Complete Milton Muldrow
Natural Language Processing of a Low Resource Language (Igbo, an African Language) Stanley Nwoji Stanley Nwoji
Transformer-Models for Translating Tax Code University of Connecticut - Stamford Andrew Sherman ai, natural-language-processing, python Phillip Bradford