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Projects/Engagements

Project Title Project Institution Project Owner Tags Status Project Leader
Deep convolutional neural networks (dCNN) for image segmentation, instance labeling, and tracking. University of Delaware Anita Schwartz bash, bioinformatics, computational-chemistry, debugging, domain-specific, hpc, machine-learning, programming, programming-languages, python, researcher-facing, scripting, slurm, software-installation, tensorflow, visualization Complete Jeffrey Caplan
Model Mie scattering and light propagation through a high scattering medium using Monte Carlo simulation Southern Connecticut State University Binlin Wu matlab, monte-carlo, programming, scheduling, simulations Complete Binlin Wu
Deep learning for biomedical image analysis Southern Connecticut State University Binlin Wu ai, big-data, deep-learning, gpus, machine-learning, matlab, python, tensorflow Complete Binlin Wu
Optimization of Mouse Social Behavior Data Analyses Pipeline University of Delaware Anita Schwartz bash, batch-jobs, environment-modules, job-sizing, lustre, matlab, nfs, putty, scheduling, sge, slurm, ssh, unix-environment, x11 Complete Josh Neunuebel
Physical chemistry studies of environmental pollutant transformations: SIMION modeling of ion behavior in an electric field New Jersey Institute of Technology Galen Collier computational-chemistry, domain-specific, particle-physics, programming, researcher-facing, scripting On Hold Alexei Khalizov
Parallel analysis of variants in multiple bear genomes: algorithmic solutions Rutgers University–Camden Galen Collier Data-Facing, bioinformatics, domain-specific, researcher-facing Complete Andrey Grigoriev
Hybrid systems and LIFE methods for Mycobacterium tuberculosis Rutgers-Camden Sean McQuade matlab Complete Benedetto Piccoli
Analyzing NJ COVID-19 responses with Control theory, extending a study from earlier this year. Rutgers-Camden Sean McQuade data-facing, matlab, programming, programming-best-practices, programming-languages, researcher-facing, simulations, tools-and-techniques Complete Benedetto Piccoli
Electrostatics of the GABA(A) receptor pore Rutgers University–Camden Galen Collier bash, domain-specific, molecular-dynamics, namd, programming, programming-best-practices, programming-languages, researcher-facing, scripting, slurm In Progress Grace Brannigan
Amsterdam Modeling Suite Software Usage on Penn State’s Roar Computer Clusters Penn State University - Altoona Campus Jeffrey Nucciarone account, batch-jobs, cluster-support, computational-chemistry, cyberinfrastructure, domain-specific, file-transfer, hpc, hpc-getting-started, hpc-operations, hw-sw-integration, job-sizing, management/professional-development, pbs, permissions, provisioning, putty, quantum-mechanics, researcher-facing, schedulers, scheduling, ssh, systems-facing, technical-training-for-hpc, terminal-emulation-and-window-management, tools-and-techniques Finishing Up Kofi Adu
An optimized search algorithm for gravitational waves from post-merger remnants University of Rhode Island Gaurav Khanna astrophysics, conda, cuda, gpus, hpc, hpc-getting-started, parallelism, parallelization, python Complete Robert Coyne
Project WiCCED ML University of Delaware Anita Schwartz docker, domain-specific, hadoop, jupyterhub, kubernetes, machine-learning, programming-best-practices, programming-languages, python, r, researcher-facing, software-installation, spark, tensorflow, tuning Complete Tina Callahan
Assembly and Taxonomic Profiling of Metagenomic Sequences using Deep Learning University of Rhode Island Gaurav Khanna ai, bioinformatics, biology, deep-learning, domain-specific, gpus, hardware, machine-learning, neural-networks, python Complete Ying Zhang
Computational Simulation of One-Dimensional Porous Polymers The University at Albany, SUNY Jeremy Feldblyum monte-carlo, computational-chemistry, collaboration, materials-science In Progress Jeremy Feldblyum
Establish Computational Analysis Infrastructure for the CCRI 16-inch Telescope. Community College of Rhode Island Gaurav Khanna astrophysics, cyberinfrastructure, data-analysis, documentation, git, hpc, python, remote-servers, research-facilitation, scripting Complete Brendan Britton
A green, open-source greater than 10B parameter language model. MIT Chris Hill Recruiting Chris Hill
High Performance Computing vs Quantum Computing for Neural Networks supporting Artificial Intelligence Pace University Avery Leider ai, big-data, deep-learning, github, hpc, hpc-cluster-architecture, hpc-getting-started, hpc-operations, jupyterhub, machine-learning, natural-language-processing, notebooks, programming-for-hpc, proposal-development, python, quantum-mechanics, research-computing, research-facilitation, research-grants, research-software, researcher-facing, resources, scikit-learn, singularity, technical-training-for-hpc, tools-and-techniques, vectorization, visualization In Progress Jonathan Hill
Simulating 21st century boreal forests and fire with a state-of-the-art process-based model Cary Institute Winslow Hansen biology, cluster, cluster-support, cpus, dependencies, deployment, netcdf, performance-tuning, r Recruiting Winslow Hansen
US Tax Code to Natural Language Parsable Data for Programming Languages University of Connecticut - Stamford Kaylea Nelson natural-language-processing, python, sql In Progress Phillip Bradford
Statistical Analysis of criminal cases in the United States District Court of Puerto Rico Salve Regina University Gaurav Khanna ai, cyberinfrastructure, data-analysis, machine-learning, python In Progress Carlos Paniagua
GPN Women in HPC Chapter Great Plains Network Kate Adams In Progress Christina Roberts
Host-symbiont population genomics - analyzing the intraspecific variability of methanogenic archaeal endosymbionts of genus Methanocorpusculum hosted by a marine anaerobic ciliate Metopus sp. (Metopida) University of Rhode Island -- Bay Campus Gaurav Khanna bioinformatics, biology, cluster, genomics In Progress Roxanne Beinart
Calculation of Polymer Hydrophobicity Rob Mathers Recruiting Rob Mathers
Understanding Covid-19 Pandemic through Social Media Discussion Bryant University Gaurav Khanna ai, data-analysis, hpc-getting-started, hpc-tools, natural-language-processing, programming, programming-best-practices, programming-for-hpc, python In Progress Suhong Li
Investigating the Association between Environmental Characteristics and Psychological Well-Being Kean University Galen Collier ai, api, cloud, data-analysis, geographic-information-system, image-processing, machine-learning, programming, programming-best-practices, python Recruiting Feng Qi