| Delaware Microbiome Mapping and Database Development |
University of Delaware |
Christina Callahan |
|
Reviewing Applicants |
Christina Callahan |
| Performance Benchmarks and Optimizations of a Gravitational-Wave Simulation Software |
LIU Post |
steven liebling |
astrophysics, c++, matlab, tools-and-techniques |
Recruiting |
steven liebling |
| Physical chemistry studies of environmental pollutant transformations: SIMION modeling of ion behavior in an electric field |
New Jersey Institute of Technology |
Galen Collier |
computational-chemistry, domain-specific, particle-physics, programming, researcher-facing, scripting |
On Hold |
Alexei Khalizov |
| Metagenomic analysis to identify gene clusters associated with IgA production |
SUNY Upstate Medical University |
Joel Wilmore |
bioinformatics, biology, collaboration, genomics, python, r, research-computing, research-facilitation |
In Progress |
Joel Wilmore |
| Developing deep learning algorithms to analyze Raman spectral data for brain cancer diagnosis |
Southern CT State University |
Binlin Wu |
gpus, image-processing, machine-learning, neural-networks, python, research-computing |
In Progress |
Binlin Wu |
| Vector representation with a finance corpus |
Rhode Island College |
Gaurav Khanna |
bash, batch-jobs, cluster, deep-learning, distributed-computing, hpc, hpc-getting-started, machine-learning, parallelism, programming, programming-for-hpc, python, research-facilitation, ssh |
In Progress |
Murat Aydogdu |
| Predictive Simulation of Pulsed Electric Field Exposure Effects on Vegetable Tissues and Bacterial Suspensions |
Rowan University |
Galen Collier |
|
In Progress |
Gary Thompson |
| Deep-learning facilitated microscopy for the dissection of durable resistance to plant disease. |
University of Delaware |
Anita Schwartz |
deep-learning, hpc, python |
In Progress |
Jeffrey Caplan |
| Developing subject-specific models for the study of traumatic brain injury |
Robert Morris University |
Rika Carlsen |
anatomy, finite-element-analysis, image-processing, matlab, programming, unix-environment, workflow |
In Progress |
Rika Carlsen |
| High throughput Python pipeline to identify Horizontal Gene Transfer |
Cabrini University |
Vinayak Mathur |
bioinformatics, biology, data-wrangling, genomics, github, python, workflow |
In Progress |
Vinayak Mathur |
| Investigating the Association between Environmental Characteristics and Psychological Well-Being |
Kean University |
Galen Collier |
ai, api, cloud, data-analysis, geographic-information-system, image-processing, machine-learning, programming, programming-best-practices, python |
In Progress |
Feng Qi |
| Understanding Covid-19 Pandemic through Social Media Discussion |
Bryant University |
Gaurav Khanna |
ai, data-analysis, hpc-getting-started, hpc-tools, natural-language-processing, programming, programming-best-practices, programming-for-hpc, python |
In Progress |
Suhong Li |
| Calculation of Polymer Hydrophobicity |
Penn State-New Kensington |
Rob Mathers |
cleanup, git, github, optimization, python, research-software |
In Progress |
Rob Mathers |
| Host-symbiont population genomics - analyzing the intraspecific variability of methanogenic archaeal endosymbionts of genus Methanocorpusculum hosted by a marine anaerobic ciliate Metopus sp. (Metopida) |
University of Rhode Island -- Bay Campus |
Gaurav Khanna |
bioinformatics, biology, cluster, genomics |
In Progress |
Roxanne Beinart |
| Simulating 21st century boreal forests and fire with a state-of-the-art process-based model |
Cary Institute |
Winslow Hansen |
biology, cluster, cluster-support, cpus, dependencies, deployment, netcdf, performance-tuning, r |
In Progress |
Winslow Hansen |
| Computational Simulation of One-Dimensional Porous Polymers |
The University at Albany, SUNY |
Jeremy Feldblyum |
collaboration, computational-chemistry, materials-science, monte-carlo |
In Progress |
Jeremy Feldblyum |
| US Tax Code to Natural Language Parsable Data for Programming Languages |
University of Connecticut - Stamford |
Kaylea Nelson |
natural-language-processing, python, sql |
Finishing Up |
Phillip Bradford |
| Amsterdam Modeling Suite Software Usage on Penn State’s Roar Computer Clusters |
Penn State University - Altoona Campus |
Jeffrey Nucciarone |
account, batch-jobs, cluster-support, computational-chemistry, cyberinfrastructure, domain-specific, file-transfer, hpc, hpc-getting-started, hpc-operations, hw-sw-integration, job-sizing, management/professional-development, pbs, permissions, provisioning, putty, quantum-mechanics, researcher-facing, schedulers, scheduling, ssh, systems-facing, technical-training-for-hpc, terminal-emulation-and-window-management, tools-and-techniques |
Complete |
Kofi Adu |
| Model Mie scattering and light propagation through a high scattering medium using Monte Carlo simulation |
Southern Connecticut State University |
Binlin Wu |
matlab, monte-carlo, programming, scheduling, simulations |
Complete |
Binlin Wu |
| Deep learning for biomedical image analysis |
Southern Connecticut State University |
Binlin Wu |
ai, big-data, deep-learning, gpus, machine-learning, matlab, python, tensorflow |
Complete |
Binlin Wu |
| Optimization of Mouse Social Behavior Data Analyses Pipeline |
University of Delaware |
Anita Schwartz |
bash, batch-jobs, environment-modules, job-sizing, lustre, matlab, nfs, putty, scheduling, sge, slurm, ssh, unix-environment, x11 |
Complete |
Josh Neunuebel |
| Parallel analysis of variants in multiple bear genomes: algorithmic solutions |
Rutgers University–Camden |
Galen Collier |
Data-Facing, bioinformatics, domain-specific, researcher-facing |
Complete |
Andrey Grigoriev |
| Hybrid systems and LIFE methods for Mycobacterium tuberculosis |
Rutgers-Camden |
Sean McQuade |
matlab |
Complete |
Benedetto Piccoli |
| Coral Genomics: An assessment of metabolic pathways and genes influencing coral bleaching. Implications for the development of hydra as a model organism. |
Wilmington University |
Anita Schwartz |
genomics, hpc |
Complete |
Milton Muldrow |
| Analyzing NJ COVID-19 responses with Control theory, extending a study from earlier this year. |
Rutgers-Camden |
Sean McQuade |
data-facing, matlab, programming, programming-best-practices, programming-languages, researcher-facing, simulations, tools-and-techniques |
Complete |
Benedetto Piccoli |
| Electrostatics of the GABA(A) receptor pore |
Rutgers University–Camden |
Galen Collier |
bash, domain-specific, molecular-dynamics, namd, programming, programming-best-practices, programming-languages, researcher-facing, scripting, slurm |
Complete |
Grace Brannigan |
| High Performance Computing vs Quantum Computing for Neural Networks supporting Artificial Intelligence |
Pace University |
Avery Leider |
ai, big-data, deep-learning, github, hpc, hpc-cluster-architecture, hpc-getting-started, hpc-operations, jupyterhub, machine-learning, natural-language-processing, notebooks, programming-for-hpc, proposal-development, python, quantum-mechanics, research-computing, research-facilitation, research-grants, research-software, researcher-facing, resources, scikit-learn, singularity, technical-training-for-hpc, tools-and-techniques, vectorization, visualization |
Complete |
Jonathan Hill |
| An optimized search algorithm for gravitational waves from post-merger remnants |
University of Rhode Island |
Gaurav Khanna |
astrophysics, conda, cuda, gpus, hpc, hpc-getting-started, parallelism, parallelization, python |
Complete |
Robert Coyne |
| Project WiCCED ML |
University of Delaware |
Anita Schwartz |
docker, domain-specific, hadoop, jupyterhub, kubernetes, machine-learning, programming-best-practices, programming-languages, python, r, researcher-facing, software-installation, spark, tensorflow, tuning |
Complete |
Tina Callahan |
| Assembly and Taxonomic Profiling of Metagenomic Sequences using Deep Learning |
University of Rhode Island |
Gaurav Khanna |
ai, bioinformatics, biology, deep-learning, domain-specific, gpus, hardware, machine-learning, neural-networks, python |
Complete |
Ying Zhang |
| Statistical Analysis of criminal cases in the United States District Court of Puerto Rico |
Salve Regina University |
Gaurav Khanna |
ai, cyberinfrastructure, data-analysis, machine-learning, python |
Complete |
Carlos Paniagua |
| Establish Computational Analysis Infrastructure for the CCRI 16-inch Telescope. |
Community College of Rhode Island |
Gaurav Khanna |
astrophysics, cyberinfrastructure, data-analysis, documentation, git, hpc, python, remote-servers, research-facilitation, scripting |
Complete |
Brendan Britton |
| Deep convolutional neural networks (dCNN) for image segmentation, instance labeling, and tracking. |
University of Delaware |
Anita Schwartz |
bash, bioinformatics, computational-chemistry, debugging, domain-specific, hpc, machine-learning, programming, programming-languages, python, researcher-facing, scripting, slurm, software-installation, tensorflow, visualization |
Complete |
Jeffrey Caplan |