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Projects/Engagements

Project Title Project Institution Project Owner Tags Status Project Leader
Deep convolutional neural networks (dCNN) for image segmentation, instance labeling, and tracking. University of Delaware Anita Schwartz Researcher-facing, Domain-Specific, bioinformatics, computational-chemistry, machine-learning, visualization, Programming-languages-and-software-support, scripting, programming, python, bash, HPC, slurm, Software-installation, tensorflow, debugging In Progress Jeffrey Caplan
End-to-end learning of protein-protein interactions Rutgers University–Camden Galen Collier Researcher-facing, Domain-Specific, bioinformatics, computational-chemistry, machine-learning, visualization, Programming-languages-and-software-support, programming-best-practices, scripting, programming, python, bash, HPC, slurm, Software-installation, tensorflow, tuning, debugging In Progress Guillaume Lamoureux
Model Mie scattering and light propagation through a high scattering medium using Monte Carlo simulation Southern Connecticut State University Binlin Wu data-handling, Simulations, monte-carlo, scheduling, programming, matlab In Progress Binlin Wu
Deep learning for biomedical image analysis Southern Connecticut State University Binlin Wu big-data, AI, deep-learning, machine-learning, python, matlab, gpus, tensorflow In Progress Binlin Wu
Optimization of Mouse Social Behavior Data Analyses Pipeline University of Delaware Anita Schwartz batch-jobs, job-sizing, scheduling, matlab, environment-modules, bash, unix-environment, lustre, nfs, slurm, sge, putty, x11, ssh In Progress Josh Neunuebel
Physical chemistry studies of environmental pollutant transformations: SIMION modeling of ion behavior in an electric field New Jersey Institute of Technology Galen Collier Researcher-facing, Domain-Specific, computational-chemistry, particle-physics, scripting, programming New and Recruiting Alexei Khalizov
Physical chemistry studies of environmental pollutant transformations: mass spectra analysis New Jersey Institute of Technology Galen Collier Researcher-facing, Domain-Specific, computational-chemistry, particle-physics, scripting, programming, matlab New and Recruiting Alexei Khalizov
Physical chemistry studies of environmental pollutant transformations: LabVIEW codes for electrostatic collection and analysis of aerosol nanoparticles New Jersey Institute of Technology Galen Collier Researcher-facing, Domain-Specific, computational-chemistry, particle-physics, scripting, programming New and Recruiting Alexei Khalizov
Physical chemistry studies of environmental pollutant transformations: MATLAB codes for morphological analysis of fractal soot aggregates New Jersey Institute of Technology Galen Collier Researcher-facing, Domain-Specific, computational-chemistry, particle-physics, scripting, programming, matlab New and Recruiting Alexei Khalizov
Parallel analysis of variants in multiple bear genomes Rutgers University–Camden Galen Collier Researcher-facing, Domain-Specific, bioinformatics, Data-Facing In Progress Andrey Grigoriev
Hybrid systems and LIFE methods for Mycobacterium tuberculosis Rutgers-Camden Sean McQuade matlab In Progress Benedetto Piccoli
Analyzing NJ COVID-19 responses with Control theory, extending a study from earlier this year. Rutgers-Camden Sean McQuade Data-facing, Researcher-facing, Simulations, Tools-and-Techniques, Programming-languages-and-software-support, programming-best-practices, programming, matlab In Progress Benedetto Piccoli
Electrostatics of the GABA(A) receptor pore Rutgers University–Camden Galen Collier Researcher-facing, Domain-Specific, molecular-dynamics, namd, Programming-languages-and-software-support, programming-best-practices, scripting, programming, bash, slurm In Progress Grace Brannigan
Amsterdam Modeling Suite Software Usage on Penn State’s Roar Computer Clusters Penn State University - Altoona Campus Jeffrey Nucciarone Researcher-facing, Domain-Specific, computational-chemistry, quantum-mechanics, hpc-getting-started, Tools-and-Techniques, batch-jobs, job-sizing, scheduling, terminal-emulation-and-window-management, Systems-facing, HPC-Operations, accounts, provisioning, permissions, hw-and-sw-integration, HPC, scheduler, pbs, Cluster-support, file-transfer, putty, ssh, Management/Professional Development, Technical-Training-for-HPC, Unclassified, cyberinfrastructure, HPCs In Progress Kofi Adu
An optimized search algorithm for gravitational waves from post-merger remnants University of Rhode Island Gaurav Khanna astrophysics, hpc-getting-started, parallelism, python, gpus, HPC, conda, cuda, parallelization In Progress Robert Coyne
Project WiCCED ML University of Delaware Anita Schwartz Researcher-facing, Domain-Specific, machine-learning, docker, Programming-languages-and-software-support, programming-best-practices, python, r, Software-installation, tensorflow, tuning, spark, kubernetes, jupyterhub, hadoop In Progress Tina Callahan
Assembly and Taxonomic Profiling of Metagenomic Sequences using Deep Learning University of Rhode Island Gaurav Khanna biology, data, neural-network, Domain-Specific, AI, bioinformatics, deep-learning, machine-learning, python, Hardware, gpus Recruiting Ying Zhang