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Project Title Project Institution Project Owner Tags Status Project Leader
Delaware Microbiome Mapping and Database Development University of Delaware Christina Callahan Reviewing Applicants Christina Callahan
Performance Benchmarks and Optimizations of a Gravitational-Wave Simulation Software LIU Post steven liebling astrophysics, c++, matlab, tools-and-techniques Recruiting steven liebling
Physical chemistry studies of environmental pollutant transformations: SIMION modeling of ion behavior in an electric field New Jersey Institute of Technology Galen Collier computational-chemistry, domain-specific, particle-physics, programming, researcher-facing, scripting On Hold Alexei Khalizov
Metagenomic analysis to identify gene clusters associated with IgA production SUNY Upstate Medical University Joel Wilmore bioinformatics, biology, collaboration, genomics, python, r, research-computing, research-facilitation In Progress Joel Wilmore
Developing deep learning algorithms to analyze Raman spectral data for brain cancer diagnosis Southern CT State University Binlin Wu gpus, image-processing, machine-learning, neural-networks, python, research-computing In Progress Binlin Wu
Vector representation with a finance corpus Rhode Island College Gaurav Khanna bash, batch-jobs, cluster, deep-learning, distributed-computing, hpc, hpc-getting-started, machine-learning, parallelism, programming, programming-for-hpc, python, research-facilitation, ssh In Progress Murat Aydogdu
Predictive Simulation of Pulsed Electric Field Exposure Effects on Vegetable Tissues and Bacterial Suspensions Rowan University Galen Collier In Progress Gary Thompson
Deep-learning facilitated microscopy for the dissection of durable resistance to plant disease. University of Delaware Anita Schwartz deep-learning, hpc, python In Progress Jeffrey Caplan
Developing subject-specific models for the study of traumatic brain injury Robert Morris University Rika Carlsen anatomy, finite-element-analysis, image-processing, matlab, programming, unix-environment, workflow In Progress Rika Carlsen
High throughput Python pipeline to identify Horizontal Gene Transfer Cabrini University Vinayak Mathur bioinformatics, biology, data-wrangling, genomics, github, python, workflow In Progress Vinayak Mathur
Investigating the Association between Environmental Characteristics and Psychological Well-Being Kean University Galen Collier ai, api, cloud, data-analysis, geographic-information-system, image-processing, machine-learning, programming, programming-best-practices, python In Progress Feng Qi
Understanding Covid-19 Pandemic through Social Media Discussion Bryant University Gaurav Khanna ai, data-analysis, hpc-getting-started, hpc-tools, natural-language-processing, programming, programming-best-practices, programming-for-hpc, python In Progress Suhong Li
Calculation of Polymer Hydrophobicity Penn State-New Kensington Rob Mathers cleanup, git, github, optimization, python, research-software In Progress Rob Mathers
Host-symbiont population genomics - analyzing the intraspecific variability of methanogenic archaeal endosymbionts of genus Methanocorpusculum hosted by a marine anaerobic ciliate Metopus sp. (Metopida) University of Rhode Island -- Bay Campus Gaurav Khanna bioinformatics, biology, cluster, genomics In Progress Roxanne Beinart
Simulating 21st century boreal forests and fire with a state-of-the-art process-based model Cary Institute Winslow Hansen biology, cluster, cluster-support, cpus, dependencies, deployment, netcdf, performance-tuning, r In Progress Winslow Hansen
Computational Simulation of One-Dimensional Porous Polymers The University at Albany, SUNY Jeremy Feldblyum collaboration, computational-chemistry, materials-science, monte-carlo In Progress Jeremy Feldblyum
US Tax Code to Natural Language Parsable Data for Programming Languages University of Connecticut - Stamford Kaylea Nelson natural-language-processing, python, sql Finishing Up Phillip Bradford
Amsterdam Modeling Suite Software Usage on Penn State’s Roar Computer Clusters Penn State University - Altoona Campus Jeffrey Nucciarone account, batch-jobs, cluster-support, computational-chemistry, cyberinfrastructure, domain-specific, file-transfer, hpc, hpc-getting-started, hpc-operations, hw-sw-integration, job-sizing, management/professional-development, pbs, permissions, provisioning, putty, quantum-mechanics, researcher-facing, schedulers, scheduling, ssh, systems-facing, technical-training-for-hpc, terminal-emulation-and-window-management, tools-and-techniques Complete Kofi Adu
Model Mie scattering and light propagation through a high scattering medium using Monte Carlo simulation Southern Connecticut State University Binlin Wu matlab, monte-carlo, programming, scheduling, simulations Complete Binlin Wu
Deep learning for biomedical image analysis Southern Connecticut State University Binlin Wu ai, big-data, deep-learning, gpus, machine-learning, matlab, python, tensorflow Complete Binlin Wu
Optimization of Mouse Social Behavior Data Analyses Pipeline University of Delaware Anita Schwartz bash, batch-jobs, environment-modules, job-sizing, lustre, matlab, nfs, putty, scheduling, sge, slurm, ssh, unix-environment, x11 Complete Josh Neunuebel
Parallel analysis of variants in multiple bear genomes: algorithmic solutions Rutgers University–Camden Galen Collier Data-Facing, bioinformatics, domain-specific, researcher-facing Complete Andrey Grigoriev
Hybrid systems and LIFE methods for Mycobacterium tuberculosis Rutgers-Camden Sean McQuade matlab Complete Benedetto Piccoli
Coral Genomics: An assessment of metabolic pathways and genes influencing coral bleaching. Implications for the development of hydra as a model organism. Wilmington University Anita Schwartz genomics, hpc Complete Milton Muldrow
Analyzing NJ COVID-19 responses with Control theory, extending a study from earlier this year. Rutgers-Camden Sean McQuade data-facing, matlab, programming, programming-best-practices, programming-languages, researcher-facing, simulations, tools-and-techniques Complete Benedetto Piccoli
Electrostatics of the GABA(A) receptor pore Rutgers University–Camden Galen Collier bash, domain-specific, molecular-dynamics, namd, programming, programming-best-practices, programming-languages, researcher-facing, scripting, slurm Complete Grace Brannigan
High Performance Computing vs Quantum Computing for Neural Networks supporting Artificial Intelligence Pace University Avery Leider ai, big-data, deep-learning, github, hpc, hpc-cluster-architecture, hpc-getting-started, hpc-operations, jupyterhub, machine-learning, natural-language-processing, notebooks, programming-for-hpc, proposal-development, python, quantum-mechanics, research-computing, research-facilitation, research-grants, research-software, researcher-facing, resources, scikit-learn, singularity, technical-training-for-hpc, tools-and-techniques, vectorization, visualization Complete Jonathan Hill
An optimized search algorithm for gravitational waves from post-merger remnants University of Rhode Island Gaurav Khanna astrophysics, conda, cuda, gpus, hpc, hpc-getting-started, parallelism, parallelization, python Complete Robert Coyne
Project WiCCED ML University of Delaware Anita Schwartz docker, domain-specific, hadoop, jupyterhub, kubernetes, machine-learning, programming-best-practices, programming-languages, python, r, researcher-facing, software-installation, spark, tensorflow, tuning Complete Tina Callahan
Assembly and Taxonomic Profiling of Metagenomic Sequences using Deep Learning University of Rhode Island Gaurav Khanna ai, bioinformatics, biology, deep-learning, domain-specific, gpus, hardware, machine-learning, neural-networks, python Complete Ying Zhang
Statistical Analysis of criminal cases in the United States District Court of Puerto Rico Salve Regina University Gaurav Khanna ai, cyberinfrastructure, data-analysis, machine-learning, python Complete Carlos Paniagua
Establish Computational Analysis Infrastructure for the CCRI 16-inch Telescope. Community College of Rhode Island Gaurav Khanna astrophysics, cyberinfrastructure, data-analysis, documentation, git, hpc, python, remote-servers, research-facilitation, scripting Complete Brendan Britton
Deep convolutional neural networks (dCNN) for image segmentation, instance labeling, and tracking. University of Delaware Anita Schwartz bash, bioinformatics, computational-chemistry, debugging, domain-specific, hpc, machine-learning, programming, programming-languages, python, researcher-facing, scripting, slurm, software-installation, tensorflow, visualization Complete Jeffrey Caplan