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Projects/Engagements

Project Title Project Institution Project Owner Tags Status Project Leader
Delaware Microbiome Mapping and Database Development University of Delaware Christina Callahan Reviewing Applicants Christina Callahan
Performance Benchmarks and Optimizations of a Gravitational-Wave Simulation Software LIU Post steven liebling astrophysics, c++, matlab, tools-and-techniques Recruiting steven liebling
Physical chemistry studies of environmental pollutant transformations: SIMION modeling of ion behavior in an electric field New Jersey Institute of Technology Galen Collier computational-chemistry, domain-specific, particle-physics, programming, researcher-facing, scripting On Hold Alexei Khalizov
Metagenomic analysis to identify gene clusters associated with IgA production SUNY Upstate Medical University Joel Wilmore bioinformatics, biology, collaboration, genomics, python, r, research-computing, research-facilitation In Progress Joel Wilmore
Developing deep learning algorithms to analyze Raman spectral data for brain cancer diagnosis Southern CT State University Binlin Wu gpus, image-processing, machine-learning, neural-networks, python, research-computing In Progress Binlin Wu
Vector representation with a finance corpus Rhode Island College Gaurav Khanna bash, batch-jobs, cluster, deep-learning, distributed-computing, hpc, hpc-getting-started, machine-learning, parallelism, programming, programming-for-hpc, python, research-facilitation, ssh In Progress Murat Aydogdu
Predictive Simulation of Pulsed Electric Field Exposure Effects on Vegetable Tissues and Bacterial Suspensions Rowan University Galen Collier In Progress Gary Thompson
Deep-learning facilitated microscopy for the dissection of durable resistance to plant disease. University of Delaware Anita Schwartz deep-learning, hpc, python In Progress Jeffrey Caplan
Developing subject-specific models for the study of traumatic brain injury Robert Morris University Rika Carlsen anatomy, finite-element-analysis, image-processing, matlab, programming, unix-environment, workflow In Progress Rika Carlsen
High throughput Python pipeline to identify Horizontal Gene Transfer Cabrini University Vinayak Mathur bioinformatics, biology, data-wrangling, genomics, github, python, workflow In Progress Vinayak Mathur
Investigating the Association between Environmental Characteristics and Psychological Well-Being Kean University Galen Collier ai, api, cloud, data-analysis, geographic-information-system, image-processing, machine-learning, programming, programming-best-practices, python In Progress Feng Qi
Understanding Covid-19 Pandemic through Social Media Discussion Bryant University Gaurav Khanna ai, data-analysis, hpc-getting-started, hpc-tools, natural-language-processing, programming, programming-best-practices, programming-for-hpc, python In Progress Suhong Li
Calculation of Polymer Hydrophobicity Penn State-New Kensington Rob Mathers cleanup, git, github, optimization, python, research-software In Progress Rob Mathers
Host-symbiont population genomics - analyzing the intraspecific variability of methanogenic archaeal endosymbionts of genus Methanocorpusculum hosted by a marine anaerobic ciliate Metopus sp. (Metopida) University of Rhode Island -- Bay Campus Gaurav Khanna bioinformatics, biology, cluster, genomics In Progress Roxanne Beinart
Simulating 21st century boreal forests and fire with a state-of-the-art process-based model Cary Institute Winslow Hansen biology, cluster, cluster-support, cpus, dependencies, deployment, netcdf, performance-tuning, r In Progress Winslow Hansen
Computational Simulation of One-Dimensional Porous Polymers The University at Albany, SUNY Jeremy Feldblyum collaboration, computational-chemistry, materials-science, monte-carlo In Progress Jeremy Feldblyum
US Tax Code to Natural Language Parsable Data for Programming Languages University of Connecticut - Stamford Kaylea Nelson natural-language-processing, python, sql Finishing Up Phillip Bradford
Amsterdam Modeling Suite Software Usage on Penn State’s Roar Computer Clusters Penn State University - Altoona Campus Jeffrey Nucciarone account, batch-jobs, cluster-support, computational-chemistry, cyberinfrastructure, domain-specific, file-transfer, hpc, hpc-getting-started, hpc-operations, hw-sw-integration, job-sizing, management/professional-development, pbs, permissions, provisioning, putty, quantum-mechanics, researcher-facing, schedulers, scheduling, ssh, systems-facing, technical-training-for-hpc, terminal-emulation-and-window-management, tools-and-techniques Complete Kofi Adu
Model Mie scattering and light propagation through a high scattering medium using Monte Carlo simulation Southern Connecticut State University Binlin Wu matlab, monte-carlo, programming, scheduling, simulations Complete Binlin Wu
Deep learning for biomedical image analysis Southern Connecticut State University Binlin Wu ai, big-data, deep-learning, gpus, machine-learning, matlab, python, tensorflow Complete Binlin Wu
Optimization of Mouse Social Behavior Data Analyses Pipeline University of Delaware Anita Schwartz bash, batch-jobs, environment-modules, job-sizing, lustre, matlab, nfs, putty, scheduling, sge, slurm, ssh, unix-environment, x11 Complete Josh Neunuebel
Parallel analysis of variants in multiple bear genomes: algorithmic solutions Rutgers University–Camden Galen Collier Data-Facing, bioinformatics, domain-specific, researcher-facing Complete Andrey Grigoriev
Hybrid systems and LIFE methods for Mycobacterium tuberculosis Rutgers-Camden Sean McQuade matlab Complete Benedetto Piccoli
Coral Genomics: An assessment of metabolic pathways and genes influencing coral bleaching. Implications for the development of hydra as a model organism. Wilmington University Anita Schwartz genomics, hpc Complete Milton Muldrow
Analyzing NJ COVID-19 responses with Control theory, extending a study from earlier this year. Rutgers-Camden Sean McQuade data-facing, matlab, programming, programming-best-practices, programming-languages, researcher-facing, simulations, tools-and-techniques Complete Benedetto Piccoli
Electrostatics of the GABA(A) receptor pore Rutgers University–Camden Galen Collier bash, domain-specific, molecular-dynamics, namd, programming, programming-best-practices, programming-languages, researcher-facing, scripting, slurm Complete Grace Brannigan
High Performance Computing vs Quantum Computing for Neural Networks supporting Artificial Intelligence Pace University Avery Leider ai, big-data, deep-learning, github, hpc, hpc-cluster-architecture, hpc-getting-started, hpc-operations, jupyterhub, machine-learning, natural-language-processing, notebooks, programming-for-hpc, proposal-development, python, quantum-mechanics, research-computing, research-facilitation, research-grants, research-software, researcher-facing, resources, scikit-learn, singularity, technical-training-for-hpc, tools-and-techniques, vectorization, visualization Complete Jonathan Hill
An optimized search algorithm for gravitational waves from post-merger remnants University of Rhode Island Gaurav Khanna astrophysics, conda, cuda, gpus, hpc, hpc-getting-started, parallelism, parallelization, python Complete Robert Coyne
Project WiCCED ML University of Delaware Anita Schwartz docker, domain-specific, hadoop, jupyterhub, kubernetes, machine-learning, programming-best-practices, programming-languages, python, r, researcher-facing, software-installation, spark, tensorflow, tuning Complete Tina Callahan
Assembly and Taxonomic Profiling of Metagenomic Sequences using Deep Learning University of Rhode Island Gaurav Khanna ai, bioinformatics, biology, deep-learning, domain-specific, gpus, hardware, machine-learning, neural-networks, python Complete Ying Zhang
Statistical Analysis of criminal cases in the United States District Court of Puerto Rico Salve Regina University Gaurav Khanna ai, cyberinfrastructure, data-analysis, machine-learning, python Complete Carlos Paniagua
Establish Computational Analysis Infrastructure for the CCRI 16-inch Telescope. Community College of Rhode Island Gaurav Khanna astrophysics, cyberinfrastructure, data-analysis, documentation, git, hpc, python, remote-servers, research-facilitation, scripting Complete Brendan Britton
Deep convolutional neural networks (dCNN) for image segmentation, instance labeling, and tracking. University of Delaware Anita Schwartz bash, bioinformatics, computational-chemistry, debugging, domain-specific, hpc, machine-learning, programming, programming-languages, python, researcher-facing, scripting, slurm, software-installation, tensorflow, visualization Complete Jeffrey Caplan