programming best practices

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Projects

Project Title	Project Institution	Project Owner	Tags	Status
End-to-end learning of protein-protein interactions	Rutgers University–Camden	Galen Collier	Researcher-facing, DomainSpecific, BioInformatics, computational chemistry, Machine-Learning, visualization, Programming Languages and Software Support, programming best practices, scripting, programming, python, bash, HPC, slurm, SoftwareInstallation, tensorflow, tuning, debugging	New and Recruiting
Electrostatics of the GABA(A) receptor pore	Rutgers University–Camden	Galen Collier	Researcher-facing, DomainSpecific, Molecular-Dynamics, namd, Programming Languages and Software Support, programming best practices, scripting, programming, bash, slurm	New and Recruiting

Student Facilitators

Name	Skills	Interests
Alex Flosdorf	bash c++ programming programming best practices Programming Languages and Software Support python
Dylan Le	bash c++ Monte Carlo mpi programming programming best practices Programming Languages and Software Support python Simulations	AI big data Cloud - Commercial Cloud - Open source ClusterSupport CyberSecurity Deep-Learning HPC Machine-Learning mpi
Richard Le	bash c++ Compiling debugging parallelism pip programming best practices Programming Languages and Software Support python SoftwareInstallation	AI big data Deep-Learning ImageProcessing Machine-Learning NaturalLanguageProcessing
Igor Nachevnik	accounts acls archive azure backup bash batch jobs cifs Cloud - Commercial Compiling cpus CyberInfrastructure CyberSecurity data handling Data-facing desktops filesystem firewall graphics hardware architecture hw/sw integration internet networking nfs permissions professional development programming best practices putty rdp resources samba scheduling scripting security sftp smb ssh storage tcp terminal emulation/window management unix environment VideoProcessing visualization vpn vpn Workforce Development	aws azure big data Cloud/VM Compiling conda containers CyberInfrastructure Deep-Learning distributed computing Entrepreneurship HPC HPC Cluster build HPC Getting Started hpc operations linear programming Machine-Learning mathematica matlab metadata ondemand OS parallelism parallelization performance privacy python r rstudio-server s3 SoftwareInstallation spss stata tuning website Workforce Development x11

Mentors and Regional Facilitators

Name	Region	Skills	Interests
Scott Valcourt	Northeast	accounts bash batch jobs big data Compiling CyberInfrastructure data handling data management data-lifecycle desktops distributed computing doi dtn firewall hardware HPC hpc operations HPCs internet metadata network networking open on-demand professional development programming programming best practices Programming Languages and Software Support provisioning Researcher-facing resources ScienceDMZ sdn security Site-Specific SoftwareInstallation spark Systems-facing tcp terminal emulation/window management Tools/Techniques unclassified unix environment website
Adrian Del Maestro	Northeast	batch jobs c++ Compiling cpus CyberInfrastructure data management debugging gpus julia jupyterhub mathematica ondemand parallelism parallelization performance programming programming best practices python
Katia Bulekova	Northeast	batch jobs big data c++ cuda data handling data wrangling programming best practices Programming Languages and Software Support r
Martin Cuma	RMACC	bash batch jobs c++ Compiling debugging distributed computing environment-modules job sizing matlab mpi mpi ondemand open on-demand parallelism parallelization performance programming programming best practices python r scheduling scripting	bash batch jobs c++ Compiling comsol conda containers cpus cuda debugging distributed computing environment-modules gpus hardware architecture job sizing matlab mpi ondemand open on-demand parallelism performance programming programming best practices python r rstudio-server scheduling scripting slurm SoftwareInstallation unix environment
Kaylea Nelson	CAREERS	Astrophysics bash batch jobs ClusterSupport Compiling conda debugging environment-modules file-transfer globus HPC HPC Getting Started job sizing mpi mpi parallelism performance programming programming best practices python Researcher-facing resources scheduling scripting sftp slurm SoftwareInstallation ssh unix environment x11	acls Astrophysics bash batch jobs c++ Compiling conda Data-facing debugging distributed computing environment-modules gpfs HPC Getting Started job sizing linear programming mpi mpi open on-demand parallelism performance programming best practices Programming Languages and Software Support python Researcher-facing resources scheduling scripting slurm storage
Grant Scott	Great Plains	AI aws bash big data c++ Cloud/VM Compiling containers cpus cuda CUI CyberSecurity data handling data management debugging Deep-Learning distributed computing Entrepreneurship gce geographicinformationsystem gpus hardware hardware architecture HPC ImageProcessing jupyterhub Machine-Learning mpi mpi parallelism parallelization parallelization performance programming programming best practices Project Management putty python s3 scripting security ssh tensorflow terminal emulation/window management unix environment vectorization visualization Workforce Development	Cloud/VM Data-facing Management/Professional Development Researcher-facing
Jeffrey Nucciarone	CAREERS	archive bash big data ClusterSupport Community Outreach CyberSecurity data handling Deep-Learning filesystem gaussian HPC HPC Getting Started Machine-Learning matlab mpi open on-demand professional development programming best practices Technical Training for HPC

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