workflow

Mentors and Regional Facilitators

Name	Region	Skills	Interests
Cyd Burrows-Sc…	Campus Champions	arcgis aws azure cloud-commercial cybersecurity data-lifecycle data-management data-wrangling more...
Christina Divoll	Campus Champions, ACCESS CSSN	acls Admin and Support administering-hpc bash cluster-support Data Storage data-lifecycle data-management more...	Cloud
Craig Gross	Campus Champions	bash c c++ conda data-analysis data-science git github more...
Ibrahim Sheikh	CAREERS	benchmarking community-outreach debugging deep-learning dependencies encryption gis git more...	backup benchmarking community-outreach computational-chemistry deep-learning file-formats gamess gis more...
Amy Koshoffer	Campus Champions	biology data-lifecycle data-management doi file-formats workflow	archiving backup biology data-lifecycle data-management doi file-formats file-transfer more...
shuai liu	ACCESS CSSN	ai anaconda azure big-data bioinformatics biology containers data-analysis more...

Users

Name	Roles	Skills	Interests
Ibrahim Sheikh	student facilitator mentor regional facilitator researcher/educator rcf	benchmarking community-outreach debugging deep-learning dependencies encryption gis git more...	backup benchmarking community-outreach computational-chemistry deep-learning file-formats gamess gis more...
Katie Salas	student facilitator	community-outreach data-analysis data-lifecycle data-wrangling python r sql workflow
Sander Cohen-Janes	student facilitator	anaconda bash benchmarking dft gaussian github mathematica python more...	c git python r xsede

Projects

Project Title	Project Institution	Project Owner	Tags	Status Sort ascending
Computational pipelines for the analysis of plastic-degrading genes	University of Rhode Island	Gaurav Khanna	bioinformatics, biology, workflow, workforce-development	In Progress
High throughput Python pipeline to identify Horizontal Gene Transfer	Cabrini University	Vinayak Mathur	bioinformatics, biology, data-wrangling, genomics, github, python, workflow	Halted
Developing subject-specific models for the study of traumatic brain injury	Robert Morris University	Rika Carlsen	finite-element-analysis, image-processing, matlab, programming, unix-environment, workflow	Complete

Blog Entries

There are no Blog Entries associated with this topic.

Organizations

Globus

Website

https://www.globus.org

cloud-storage scripting data-management data-management-software data-transfer

WCI

cloud-computing visualization big-data data-analysis deep-learning

Affinity Groups

Logo	Name	Description	Tags	Join
	Pegasus	Pegasus is a workflow management system, which enables you to run computational workflows across ACCESS resources. Users will seamlessly be able to orchestrate jobs and data movements at different…	pegasus workflow	Login to join

Announcements

Title	Date
ACCESS Pegasus – Hosted Workflow Environment with HTCondor Annex	09/28/22

Upcoming Events & Trainings

Title	Date
ACCESS Pegasus Office Hours	5/03/24
GlobusWorld 2024	5/07/24
ACCESS Pegasus Office Hours	5/10/24

Topics from Ask.CI

Resources

Title	Category	Tags	Skill Level
Recommended Libraries for Cyberinfrastructure Users Developing Jupyter Notebooks	Website	ai, big-data, data-analysis, machine-learning, data-sharing, data-lifecycle, data-management, data-management-software, data-reproducibility, data-wrangling, github-pages, workflow, astrophysics, data-science, computational-chemistry, genomics, materials-science, gravitational-waves, oceanography, particle-physics, physiology, psychology, quantum-computing, quantum-mechanics, biology, science-gateway, conda, jupyterhub, python	Beginner, Intermediate, Advanced
Use Windows Subsystem for Linux for HPC Command Line Access from Windows	Tool	workflow, ssh	Beginner
How the Little Jupyter Notebook Became a Web App: Managing Increasing Complexity with nbdev	Learning	data-sharing, data-management-software, data-reproducibility, github, workflow, astrophysics, data-science, novel-accelerators, computational-chemistry, genomics, materials-science, gravitational-waves, oceanography, particle-physics, physiology, psychology, quantum-computing, quantum-mechanics, biology, science-gateway, software-carpentry, jupyterhub, programming, python	Beginner, Intermediate, Advanced

All CI Links with this tag

Engagements

There are no Engagements associated with this topic. View All Engagements.

People with Expertise

Tyler Bloom

University of Vermont

Programs

Northeast

Roles

student-facilitator

Expertise

bash

batch-jobs

benchmarking

c++

github

+8 more tags

Katie Salas

New York City College of Technology

Programs

CAREERS

Roles

student-facilitator

Expertise

community-outreach

data-analysis

python

+3 more tags

shuai liu

University of Arkansas

Programs

ACCESS CSSN

Roles

research computing facilitator

Expertise

ai

anaconda

azure

big-data

+27 more tags

People with Interest

Paul Rulis

University of Missouri-Kansas City

Programs

Campus Champions

Roles

researcher/educator, research computing facilitator

Paul Rulis

Interests

abstract

affiliations

ai

amber

atlas

+112 more tags

Frédéric Chevalier

Texas Biomedical Research Institute

Programs

Campus Champions

Roles

researcher/educator, domain champion

Interests

benchmarking

bioinformatics

biology

data-reproducibility

image-processing

+3 more tags

Lenore Martin

University of Rhoide Island

Programs

CAREERS

Roles

researcher/educator

Lenore in office

Interests

administering-hpc

ai

amber

anaconda

bioinformatics

+53 more tags