genomics

Mentors and Regional Facilitators

Name	Region	Skills	Interests
Carrie Brown	CAREERS, ACCESS CSSN	bioinformatics cleanup community-outreach data-wrangling distributed-computing genomics github github-pages more...
Diana Toups Dugas	RMACC, SWEETER, Campus Champions	bioinformatics biology genomics proposal-development research-facilitation software-carpentry training workforce-development
Jordan Hayes	Campus Champions	acls administering-hpc amber anaconda api atlas aws bash more...
shuai liu	ACCESS CSSN	ai anaconda azure big-data bioinformatics biology containers data-analysis more...
Nicholas Panchy	Campus Champions	bash bioinformatics biology conda easybuild genomics modules ondemand more...
Russell Hofmann	ACCESS CSSN	computational-chemistry data-analysis data-science dft gaussian genomics gromacs kubernetes more...	administering-hpc cluster-support computational-chemistry data-analysis data-science gaussian genomics gromacs more...
Rob Harbert	Northeast	anaconda batch-jobs big-data bioinformatics biology distributed-computing genomics gis more...
Xiaoqin Huang	ACCESS CSSN	access-account ACCESS-credits adding-users affinity-group allocations-extension allocations-proposal amber anaconda more...	ACCESS-credits ACCESS-website adding-users affinity-group allocations-extension allocations-proposal amber anaconda more...
William Lai	ACCESS CSSN	administering-hpc ai anaconda archiving backup bash bioinformatics biology more...	administering-hpc ai archiving bash benchmarking big-data bioinformatics biology more...
Yun Shen	CAREERS, Northeast, ACCESS CSSN	big-data bioinformatics data-analysis data-science genomics ondemand programming Programming more...

Users

Name	Roles	Skills	Interests
Carrie Brown	mentor steering committee	bioinformatics cleanup community-outreach data-wrangling distributed-computing genomics github github-pages more...
Emma Strand	student facilitator	anaconda archiving bash big-data bioinformatics biology community-outreach data-analysis more...
Chris Hemme	researcher/educator	anaconda big-data bioinformatics biology data-analysis genomics r	anaconda big-data bioinformatics biology data-analysis genomics python r
Ifeoma Ugwuanyi	student facilitator	bioinformatics biology data-analysis genomics python r sql	anaconda big-data bioinformatics biology data-analysis data-wrangling genomics python more...
Kenneth Acosta	student facilitator	bash bioinformatics biology conda genomics github pip python more...	batch-jobs cluster-management cluster-support data-management data-transfer distributed-computing programming-best-practices scheduling
Vinayak Mathur	researcher/educator	bioinformatics biology genomics
Lenore Martin	researcher/educator	administering-hpc amber anaconda backup bash bioinformatics biology charmm more...	administering-hpc ai amber anaconda bioinformatics biology charmm community-outreach more...
Xiaoluo Jiao	student facilitator	bioinformatics biology cleanup data-management data-reproducibility data-wrangling genomics git more...	python sql
Sanguthevar Ra…	researcher/educator	ai big-data bioinformatics biology computational-chemistry data-analysis data-science deep-learning more...
Stanley Nwoji	researcher/educator	anaconda aws azure big-data c c++ community-outreach conda more...	big-data community-outreach conda data-analysis deep-learning genomics image-processing julia more...
William Feng	student facilitator	bioinformatics biology data-analysis genomics java programming programming-best-practices python more...
Yun Shen	mentor	big-data bioinformatics data-analysis data-science genomics ondemand programming Programming more...

Projects

Project Title	Project Institution Sort ascending	Project Owner	Tags	Status
Coral Genomics: An assessment of metabolic pathways and genes influencing coral bleaching. Implications for the development of hydra as a model organism.	Wilmington University	Anita Schwartz	genomics	Complete
Host-symbiont population genomics - analyzing the intraspecific variability of methanogenic archaeal endosymbionts of genus Methanocorpusculum hosted by a marine anaerobic ciliate Metopus sp. (Metopida)	University of Rhode Island -- Bay Campus	Gaurav Khanna	bioinformatics, biology, genomics	Complete
Develop a data portal for the organization of molecular and imaging data	University of Rhode Island -- Bay Campus	Gaurav Khanna	archiving, aws, bioinformatics, biology, Cloud, Data Storage, docker, genomics	In Progress
Metagenomic analysis to identify gene clusters associated with IgA production	SUNY Upstate Medical University	Joel Wilmore	bioinformatics, biology, genomics, python, r, research-facilitation	Finishing Up
High throughput Python pipeline to identify Horizontal Gene Transfer	Cabrini University	Vinayak Mathur	bioinformatics, biology, data-wrangling, genomics, github, python, workflow	Halted

Blog Entries

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Affinity Groups

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Announcements

Title	Date
Ookami Webinar	02/14/24

Upcoming Events & Trainings

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Topics from Ask.CI

Resources

Title	Category	Tags	Skill Level
Recommended Libraries for Cyberinfrastructure Users Developing Jupyter Notebooks	Website	ai, big-data, data-analysis, machine-learning, data-sharing, data-lifecycle, data-management, data-management-software, data-reproducibility, data-wrangling, github-pages, workflow, astrophysics, data-science, computational-chemistry, genomics, materials-science, gravitational-waves, oceanography, particle-physics, physiology, psychology, quantum-computing, quantum-mechanics, biology, science-gateway, conda, jupyterhub, python	Beginner, Intermediate, Advanced
Research Software Engineering Training Materials	Website	astrophysics, data-science, novel-accelerators, computational-chemistry, genomics, materials-science, gravitational-waves, oceanography, particle-physics, physiology, psychology, quantum-computing, quantum-mechanics, biology, git, training, workforce-development, programming, programming-best-practices, version-control	Beginner, Intermediate, Advanced
MATLAB bioinformatics toolbox	Tool	visualization, data-analysis, bioinformatics, genomics, matlab	Beginner, Intermediate, Advanced

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Engagements

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People with Expertise

Xiaoluo Jiao

Columbia University, Mailman School of Public Health

Programs

CAREERS

Roles

student-facilitator

Expertise

biology

cleanup

data-management

data-reproducibility

+9 more tags

William Feng

Rutgers University-New Brunswick

Programs

CAREERS

Roles

student-facilitator

Expertise

biology

data-analysis

genomics

java

+5 more tags

Audrey Law

Bluegrass Community and Technical College

Programs

Kentucky

Roles

researcher/educator

Expertise

data-analysis

genomics

git

github

+1 more tags

People with Interest

Russell Hofmann

Internet2

Programs

ACCESS CSSN

Roles

mentor, cssn

Interests

administering-hpc

cluster-support

computational-chemistry

data-analysis

data-science

+17 more tags

Raul Gutierrez

University of Rhode Island Graduate School of Oceanography

Programs

CAREERS

Roles

student-facilitator, mentee

Interests

biology

genomics

oceanography

Chris Hemme

University of Rhode Island

Programs

CAREERS

Roles

researcher/educator

Interests

anaconda

big-data

bioinformatics

biology

data-analysis

+3 more tags