scripting

Mentors and Regional Facilitators

Name	Region	Skills	Interests
Adam Carlson	Campus Champions	archiving backup bash cluster-management cluster-support cpu-architecture data-lifecycle data-management more...
Anita Schwartz	Campus Champions	bash batch-jobs cluster-support containers data-management distributed-computing environment-modules file-transfer more...
Al Tucker	Campus Champions	administering-hpc ansible authentication backup bash centos configuration-automation cybersecurity more...	administering-hpc containers cybersecurity docker hpc-cluster-build hpc-operations hpc-tools python more...
Brian Haymore	Campus Champions, RMACC	acls backup bash batch-jobs ceph cgroups cifs cloud-storage more...	acls archiving aws azure backup bash batch-jobs ceph more...
Kevin Bryan	Campus Champions	acls bash c c++ cluster-management compiling conda debugging more...	archiving data-transfer deep-learning professional-development
Carrie Brown	CAREERS, ACCESS CSSN, CCMNet	bioinformatics cleanup community-outreach data-wrangling distributed-computing genomics github github-pages more...
Craig Gross	Campus Champions, CCMNet	bash c c++ conda data-analysis data-science git github more...
Charles Forsyth	Campus Champions	acls administering-hpc anaconda aws backup bash batch-jobs cgroups more...	administering-hpc management
Christopher Bl…	Campus Champions	anaconda aws azure bash benchmarking c c++ cloud-commercial more...
Cody Stevens	Campus Champions, CCMNet	administering-hpc anaconda archiving aws backup bash batch-jobs benchmarking more...
Craig Earley	RMACC	administering-hpc cluster-management hpc-operations scripting slurm
Dan Voss	Campus Champions, CCMNet	bash benchmarking fortran hpc-cluster-architecture hpc-getting-started profiling research-facilitation scripting more...
Daniel Morales	Campus Champions	ACCESS ACCESS-allocations ACCESS-credits adding-users allocation-management anaconda bash batch-jobs more...	ACCESS ACCESS-allocations allocation-management bioinformatics biology community-outreach conda deep-learning more...
Edwin Posada	Campus Champions	administering-hpc bash batch-jobs benchmarking c c++ cluster-management cluster-support more...
Evan Linde	Campus Champions	bash scripting software-carpentry sql	ceph cui cybersecurity key-management kubernetes openstack s3
Feseha Abebe-Akele	CCMNet	abstract ACCESS ACCESS-account ACCESS-allocations ACCESS-credits ACCESS-website account adding-users more...
Gil Speyer	ACCESS CSSN, RMACC, Campus Champions	bash bioinformatics c computational-chemistry conda cuda debugging fortran more...	bash c computational-chemistry cuda gpu matlab mpi nvidia more...
Jeff Dusenberry	Campus Champions, Northeast	batch-jobs debugging fortran gpu mpi oceanography scripting sge more...
James Deaton	ACCESS CSSN, Campus Champions, Great Plains	archiving bash cgroups community-outreach conda containers data-wrangling hpc-storage more...
Jeff Falgout	Campus Champions, RMACC	administering-hpc backup bash batch-jobs benchmarking cgroups cluster-management cluster-support more...	administering-hpc benchmarking big-data ceph cloud-storage cluster-management data-access-protocols data-transfer more...
Jacob Fosso Tande	Campus Champions	administering-hpc azure bash c++ cluster-support community-outreach compiling computational-chemistry more...
Jordan Hayes	Campus Champions	acls administering-hpc amber anaconda api atlas aws bash more...
Jacob Pessin	Northeast	aws bash batch-jobs big-data bioinformatics cloud-storage cluster-support cyverse more...
Jason Yalim	Campus Champions	administering-hpc bash benchmarking c c++ cpu-bound data-analysis data-management more...
Dean Karres	Campus Champions	programming scripting unix-environment vim
Katherine Nelson	Campus Champions, CAREERS, ACCESS CSSN	astrophysics bash batch-jobs cluster-support compiling conda debugging environment-modules more...	acls astrophysics bash batch-jobs c++ compiling conda debugging more...
Od Odbadrakh	ACCESS CSSN	ACCESS ACCESS-account ACCESS-allocations account affinity-group ai archiving bash more...	ACCESS account ai archiving bash batch-jobs benchmarking c more...
Martin Cuma	RMACC, Campus Champions	bash batch-jobs c++ compiling debugging distributed-computing environment-modules job-sizing more...	bash batch-jobs c++ compiling comsol conda containers cuda more...
Michael Strickler	Campus Champions, CAREERS	batch-jobs compiling conda easybuild modules nfs screen scripting more...	gpu hpc-cluster-build slurm
James Hutcheson	Campus Champions, ACCESS CSSN	administering-hpc api bash batch-jobs benchmarking c c++ cgroups more...
Michael Strickler	Campus Champions, CAREERS	batch-jobs compiling conda easybuild modules nfs screen scripting more...	gpu hpc-cluster-build slurm
Andrew Monaghan	RMACC, Campus Champions	bash batch-jobs compiling conda containers globus job-sizing r more...
Michael Puerrer	Campus Champions, Northeast	astrophysics bash benchmarking c c++ conda containers cuda more...
Nick Dusek	Campus Champions	administering-hpc anaconda bash batch-jobs bioinformatics compiling containers data-transfer more...
Justin Oelgoetz	Campus Champions, CCMNet	abstract affiliations astrophysics bash benchmarking c c++ citation more...	administering-hpc ai amber astrophysics benchmarking c c++ charmm more...
Lev Gorenstein	CCMNet	administering-hpc anaconda anvil archiving backup bash batch-jobs cluster more...
Paul Rulis	Campus Champions	abstract affiliations ai bash batch-jobs c c++ checkpoint more...	abstract affiliations ai amber atlas bash batch-jobs benchmarking more...
Rebecca Belshe	Campus Champions, CCMNet	abstract ACCESS ACCESS-account ACCESS-allocations ACCESS-credits ACCESS-website affiliations affinity-group more...	astrophysics biology data-science genomics materials-science oceanography psychology
Mike Renfro	Campus Champions, CCMNet	administering-hpc anaconda bash conda environment-modules fortran git github more...
Ron Rahaman	Campus Champions	anaconda bash batch-jobs benchmarking c c++ cluster-support compiling more...	containers cpu-architecture dependencies documentation gpu hpc-arch-and-perf programming-best-practices software-carpentry more...
Sean Anderson	Campus Champions, CCMNet	administering-hpc anaconda bash batch-jobs benchmarking cluster-support community-outreach compiling more...
Grant Scott	Great Plains	ai aws bash big-data c++ compiling containers cuda more...	management
Xiaoqin Huang	ACCESS CSSN	ACCESS-account ACCESS-credits adding-users affinity-group allocations-extension allocations-proposal amber anaconda more...	ACCESS-credits ACCESS-website adding-users affinity-group allocations-extension allocations-proposal amber anaconda more...
Shaohao Chen	Northeast	ai bash batch-jobs compiling containers cuda debugging deep-learning more...
Shubha Kope	Campus Champions	aws benchmarking kubernetes lmod login password programming-best-practices putty more...	ACCESS-website administering-hpc ai archiving authentication aws backup bash more...
Swabir Silayi	ACCESS CSSN, CCMNet, Campus Champions	amber anaconda bash batch-jobs benchmarking c c++ checkpoint more...	administering-hpc cluster-management
Soham Pal	ACCESS CSSN, Campus Champions, CCMNet	bash c++ conda file-formats git github github-pages jupyterhub more...
Timothy Middelkoop	ACCESS CSSN, Campus Champions, CCMNet, Great Plains	abstract ACCESS-allocations administering-hpc affinity-group ansible api aws azure more...	abstract ACCESS ACCESS-allocations ACCESS-credits administering-hpc ansible anvil api more...
Xiaoge Wang	Campus Champions	bash batch-jobs benchmarking c c++ centos checkpoint compiling more...
Wirawan Purwanto	Campus Champions, Northeast, ACCESS CSSN	bash batch-jobs c++ mpi python scripting	ai bash batch-jobs benchmarking big-data bioinformatics bridges-2 c more...

Users

Name	Roles	Skills	Interests
Carrie Brown	mentor steering committee	bioinformatics cleanup community-outreach data-wrangling distributed-computing genomics github github-pages more...
Christopher Nadeau	student facilitator	astrophysics python quantum-mechanics scripting unix-environment
Daniel Evans	researcher/educator	c c++ cleanup compiling file-formats git programming project-management more...
Jaini Bhavsar	student facilitator	anaconda bash conda github jupyterhub machine-learning python scripting more...
Jaivik Patel	student facilitator	bash c c++ compiling debugging git github java more...
Kenneth Acosta	student facilitator	bash bioinformatics biology conda genomics github pip python more...	batch-jobs cluster-management cluster-support data-management data-transfer distributed-computing programming-best-practices scheduling
Katherine Nelson	mentor rcf steering committee	astrophysics bash batch-jobs cluster-support compiling conda debugging environment-modules more...	acls astrophysics bash batch-jobs c++ compiling conda debugging more...
Michael Strickler	mentor rcf	batch-jobs compiling conda easybuild modules nfs screen scripting more...	gpu hpc-cluster-build slurm
Michael Strickler	mentor rcf	batch-jobs compiling conda easybuild modules nfs screen scripting more...	gpu hpc-cluster-build slurm
Madhukara Keku…	student facilitator	ai anaconda api aws bash big-data c conda more...
Igor Nachevnik	student facilitator	acls archiving azure backup bash batch-jobs cifs cloud-commercial more...	aws azure big-data compiling conda containers deep-learning distributed-computing more...
Parameshwaran …	student facilitator	abaqus anaconda api batch-jobs comsol data-science deep-learning finite-element-analysis more...	abaqus bash batch-jobs big-data comsol data-science deep-learning environment-modules more...
Richa Gautam	student facilitator	aws big-data compiling conda data-wrangling debugging machine-learning matlab more...	ai big-data data-management data-wrangling deep-learning linear-programming machine-learning matlab more...
Ritesh Bachhar	student facilitator	anaconda astrophysics c fortran git github machine-learning mathematica more...	api astrophysics bash batch-jobs c++ compiling cpu-architecture cuda more...
Ryan De Lorenzo	student facilitator	anaconda bash c c++ conda data-analysis jupyterhub matlab more...
Sander Cohen-Janes	student facilitator	anaconda bash benchmarking dft gaussian github mathematica python more...	c git python r xsede
Matthew Smalley	student facilitator	bash c++ containers cybersecurity file-systems gce programming putty more...
Ying-Chih Sun	student facilitator	ai archiving backup big-data data-analysis data-management data-sharing file-formats more...	ai big-data data-analysis data-management data-management-software linear-programming machine-learning mathematica more...

Projects

Project Title	Project Institution	Project Owner	Tags	Status
Physical chemistry studies of environmental pollutant transformations: SIMION modeling of ion behavior in an electric field	New Jersey Institute of Technology	Galen Collier	computational-chemistry, particle-physics, programming, scripting	Halted
Deep convolutional neural networks (dCNN) for image segmentation, instance labeling, and tracking.	University of Delaware	Anita Schwartz	bash, bioinformatics, computational-chemistry, debugging, machine-learning, programming, python, scripting, slurm, software-installation, tensorflow	Complete
Electrostatics of the GABA(A) receptor pore	Rutgers University–Camden	Galen Collier	bash, molecular-dynamics, namd, programming, programming-best-practices, scripting, slurm	Complete
Establish Computational Analysis Infrastructure for the CCRI 16-inch Telescope.	Community College of Rhode Island	Gaurav Khanna	astrophysics, data-analysis, git, python, research-facilitation, scripting	Complete

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Globus

Website

https://www.globus.org

cloud-storage scripting data-management data-management-software data-transfer

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Knowledge Base Resources

Title	Category	Tags	Skill Level
Containerized Jupyter Notebooks for HPCs	Learning	cloud, cloud-computing, openstack, scratch, data-management, data-reproducibility, github, workflow, open-ondemand, administering-hpc, configuration-automation, hpc-getting-started, hpc-tools, deployment, scripting, conda, jupyterhub, programming-best-practices, python, mpi, containers, docker, singularity	Intermediate
Working with Python on HPC Clusters	Docs	pytorch, batch-jobs, job-submission, scheduling, slurm, modules, scripting, conda, python	Beginner, Intermediate