Have a compute question no one in your lab can answer? Need help deciding which modeling tool to deploy? Wondering where to get more cycles?

NEW PROGRAM!

Distributed Experts Network (DEN)

Our experts can assist with computational challenges at small and mid-sized institutions.

Request a consult and we will find an expert who can help you. They will contact you to get the details they need to develop a plan to work through your issue.

REQUEST A CONSULT FIND OUT MORE

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Featured Projects

In Progress

Computational Simulation of One-Dimensional Porous Polymers

computational-chemistry, materials-science, monte-carlo

In Progress

Discovering the Structure, Function, and Evolution of Sirtuins and Associated Proteins in Aiptasia: A Deep Learning and Integrative Genomics Approach

deep-learning, genomics, hpc-tools, NSF ACCESS Resources

In Progress

Framework for Reduction of Ambiguity in Text Data from Generative AI

ai, natural-language-processing, python

In Progress

Training Program to Study Text Data Analytics on HPC Systems

ai, natural-language-processing, python

In Progress

Gender GAP in bankruptcy filings

In Progress

Comparative Analysis of Foreign Direct Investments and Remittances to Five English-Speaking West African Countries Using Statistical, Machine Learning and Deep learning Models

In Progress

Consumer reaction to inflation news: simulation analysis of stress in response to the news language

In Progress

Characterization of 3D organelle motion using curve fitting and clustering by unsupervised machine learning

bioinformatics

Finishing Up

Metagenomic analysis to identify gene clusters associated with IgA production

bioinformatics, biology, genomics, python, r, research-facilitation

Finishing Up

Simulating 21st century boreal forests and fire with a state-of-the-art process-based model

biology, cluster-support, dependencies, deployment, netcdf, performance-tuning, r

Finishing Up

Searching for Signals of Cosmic Anisotropy

Finishing Up

Neural network surrogate models of gravitational waveforms

AI/ML, astrophysics, deep-learning, parameter-sweeps

Complete

Deep convolutional neural networks (dCNN) for image segmentation, instance labeling, and tracking.

bash, bioinformatics, computational-chemistry, debugging, machine-learning, programming, python, scripting, slurm, software-installation, tensorflow

Complete

Model Mie scattering and light propagation through a high scattering medium using Monte Carlo simulation

matlab, monte-carlo, programming, scheduling

Complete

Deep learning for biomedical image analysis

ai, big-data, deep-learning, gpu, machine-learning, matlab, python, tensorflow

Complete

Optimization of Mouse Social Behavior Data Analyses Pipeline

bash, batch-jobs, environment-modules, job-sizing, lustre, matlab, nfs, putty, scheduling, sge, slurm, ssh, unix-environment, x11

Complete

Parallel analysis of variants in multiple bear genomes: algorithmic solutions

Data-Facing, bioinformatics

Complete

Hybrid systems and LIFE methods for Mycobacterium tuberculosis

matlab

Complete

Analyzing NJ COVID-19 responses with Control theory, extending a study from earlier this year.

matlab, programming, programming-best-practices

Complete

Electrostatics of the GABA(A) receptor pore

bash, molecular-dynamics, namd, programming, programming-best-practices, scripting, slurm

Complete

Amsterdam Modeling Suite Software Usage on Penn State’s Roar Computer Clusters

batch-jobs, cluster-support, computational-chemistry, file-transfer, hpc-operations, job-sizing, management, pbs, permissions, provisioning, putty, quantum-mechanics, schedulers, scheduling, ssh, terminal-emulation-and-window-management

Complete

An optimized search algorithm for gravitational waves from post-merger remnants

astrophysics, conda, cuda, gpu, parallelization, python

Complete

Project WiCCED ML

docker, hadoop, jupyterhub, kubernetes, machine-learning, programming-best-practices, python, r, software-installation, spark, tensorflow, tuning

Complete

Assembly and Taxonomic Profiling of Metagenomic Sequences using Deep Learning

ai, bioinformatics, biology, deep-learning, gpu, hardware, machine-learning, neural-networks, python

Complete

Establish Computational Analysis Infrastructure for the CCRI 16-inch Telescope.

astrophysics, data-analysis, git, python, research-facilitation, scripting

Complete

High Performance Computing vs Quantum Computing for Neural Networks supporting Artificial Intelligence

ai, big-data, deep-learning, github, hpc-cluster-architecture, hpc-operations, jupyterhub, machine-learning, natural-language-processing, proposal-development, python, quantum-mechanics, research-facilitation, research-grants, resources, scikit-learn, singularity, vectorization

Complete

US Tax Code to Natural Language Parsable Data for Programming Languages

natural-language-processing, python, sql

Complete

Statistical Analysis of criminal cases in the United States District Court of Puerto Rico

ai, data-analysis, machine-learning, python

Complete

Host-symbiont population genomics - analyzing the intraspecific variability of methanogenic archaeal endosymbionts of genus Methanocorpusculum hosted by a marine anaerobic ciliate Metopus sp. (Metopida)

bioinformatics, biology, genomics

Complete

Calculation of Polymer Hydrophobicity

cleanup, git, github, optimization, python

Complete

Understanding Covid-19 Pandemic through Social Media Discussion

ai, data-analysis, natural-language-processing, programming, programming-best-practices, python

Complete

Investigating the Association between Environmental Characteristics and Psychological Well-Being

ai, api, data-analysis, gis, image-processing, machine-learning, programming, programming-best-practices, python

Complete

Developing subject-specific models for the study of traumatic brain injury

finite-element-analysis, image-processing, matlab, programming, unix-environment, workflow

Complete

Coral Genomics: An assessment of metabolic pathways and genes influencing coral bleaching. Implications for the development of hydra as a model organism.

genomics

Complete

Deep-learning facilitated microscopy for the dissection of durable resistance to plant disease.

deep-learning, python

Complete

Predictive Simulation of Pulsed Electric Field Exposure Effects on Vegetable Tissues and Bacterial Suspensions

Complete

Vector Representation with a Finance Corpus

bash, batch-jobs, deep-learning, distributed-computing, machine-learning, programming, python, research-facilitation, ssh

Complete

Performance Benchmarks and Optimizations of a Gravitational-Wave Simulation Software

astrophysics, c++, matlab

Complete

Detecting Covid-19 Misinformation on Social Media

ai, bash, batch-jobs, big-data, biology, cuda

Complete

Expanding computational resources for gravitational wave detection pipelines in medium-latency and beyond

Analysis and Algorithms, astrophysics, benchmarking, data-transfer, gravitational-waves, parallelization, python, scheduling

Complete

Bias and Fairness in Machine Learning: Identifying Bias

machine-learning, natural-language-processing

Complete

Natural Language Processing of a Low Resource Language (Igbo, an African Language)

Complete

Develop a data portal for the organization of molecular and imaging data

archiving, aws, bioinformatics, biology, Cloud, Data Storage, docker, genomics

Complete

Digital Infrastructure for "The North Woods Project"

Domain Tools, professional-development, research-facilitation

Complete

Remote sensing data management for large-area forest mapping projects

api, data-management, data-sharing, gis, python, sql

Complete

Gravitational-wave Inference with Waveform Uncertainty

astrophysics, benchmarking, deep-learning, gravitational-waves, machine-learning

Complete

Bias and Fairness in Machine Learning: Mitigating Bias with unstructured data

Complete

Novel Transformer based methods for Automatic Classification and Quantification of Stromule Dynamics from Microscopy Images

bioinformatics

Complete

A Longitude Study of Global Warming Discussion on Social Media

big-data, data-analysis, data-science

Complete

Steered Molecular Dynamics Simulations on Human beta Defensin Crossing Model Bacterial Lipid Membranes

molecular-dynamics

Complete

Developing machine learning interatomic potentials for classical molecular dynamics simulations of complex perovskites

machine-learning, molecular-dynamics

Complete

Effects of wind-wave misalignment on air-sea momentum flux and drag coefficient

oceanography

Complete

Quantum mechanical simulation of fluorine-containing biomolecules

quantum-mechanics

Complete

Waveform Systematics for Black Hole Binary Mergers Models

gravitational-waves

Complete

Computational pipelines for the analysis of plastic-degrading genes

bioinformatics, biology, workflow, workforce-development

Complete

Biogeochemical cycling consequences due to the impacts on the cellular response to warming oceans

oceanography

Complete

Improving earthquake detection and localization with deep learning

oceanography

Complete

An Evaluation of Methods for Handling Missing Data in Randomized Controlled Trials with Omitted Moderation Effects

spss

Complete

Development of personalized healthy food incentives to improve diet and cardiovascular risk

biology

Complete

Ultrafast Spectral Energy Distribution Modeling of Galaxies using GPUs

optimization, parallelization, astrophysics, gpu, python

Complete

Improving habitat suitability models to understand how mesophotic coral reef distribution will respond to climate change

fluid-dynamics, job-array, job-submission, oceanography

Complete

Statistical Analysis of criminal cases in the United States District Court of Puerto Rico

Complete

Training Program to Study the Computation of Molecular Reaction Mechanisms using Gaussian on High Performance Computing (HPC) Systems

Complete

Mental Health and TikTok

Complete

Waveform Systematics for Black Hole Binary Mergers Models (extension)

ai, AI/ML, astrophysics, conda, cuda, distributed-computing, jupyterhub, neural-networks